(my trouble is with fslregister-sess though)
On Thu, Sep 26, 2013 at 11:25 PM, Emily Ward <amyuni...@gmail.com> wrote: > Hi Doug, > > Can you make that file available again? I am having a similar issue.... > > Thanks, > > Emily > > > On Mon, Jul 29, 2013 at 11:13 AM, Douglas Greve <gr...@nmr.mgh.harvard.edu > > wrote: > >> >> Hi Morgan, this is a problem with newer versions of csh -- they changed >> the way that errors are reported. Try using this version >> >> >> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/reg-feat2anat >> >> doug >> >> >> On 7/28/13 10:00 AM, Bruce Fischl wrote: >> > Hi Morgan >> > that is odd. I think Doug is traveling which may slow down his normal >> > rapid response time. >> > Bruce >> > >> > On Sat, 27 Jul 2013, Morgan Hough wrote: >> > >> >> Hi there, >> >> >> >> I am trying to run reg-feat2anat and having a bit of an odd problem. >> It runs but doesn't produce a anat2exf.register.dat. If I look at the >> anat2exf.register.dat.fslregister.log file I see right at the beginning it >> fail with: >> >> >> >> /data/results/genDIS >> >> mri_convert ERROR: could not determine file for >> > /data/freesurfer_recons/HierGENDIS/WaisgenDIS600/mri/ERROR: >> /data/results/genDIS/WaisgenDIS600/gendistask_full_search.feat/reg/freesurfer/tmp/refvol.fslregister.nii >> >> mri_convert ERROR: could not determine file for >> /data/freesurfer_recons/HierGENDIS/WaisgenDIS600/mri/ERROR: >> /data/results/genDIS/WaisgenDIS600/gendistask_full_search.feat/reg/freesurfer/tmp/refvol.fslregister.nii >> >> >> >> mri_convert: extra arguments ("not" and following) >> >> >> >> type mri_convert -u for usage >> >> >> >> This is running on a SGE cluster using Ubuntu 12.04.1, FreeSurfer 5.3 >> and FSL 5.0.4 which made me think it is is similar to Sal's problem >> recently. So I added "set fsvol = brainmask" and that seems to have fixed >> it. Is there a different fix I can make to solve this? >> >> >> >> Cheers, >> >> >> >> -Morgan >> >> >> >> >> >> >> >> _______________________________________________ >> >> Freesurfer mailing list >> >> Freesurfer@nmr.mgh.harvard.edu >> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> >> >> >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >
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