Hi Doug, Can you make that file available again? I am having a similar issue....
Thanks, Emily On Mon, Jul 29, 2013 at 11:13 AM, Douglas Greve <gr...@nmr.mgh.harvard.edu>wrote: > > Hi Morgan, this is a problem with newer versions of csh -- they changed > the way that errors are reported. Try using this version > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/reg-feat2anat > > doug > > > On 7/28/13 10:00 AM, Bruce Fischl wrote: > > Hi Morgan > > that is odd. I think Doug is traveling which may slow down his normal > > rapid response time. > > Bruce > > > > On Sat, 27 Jul 2013, Morgan Hough wrote: > > > >> Hi there, > >> > >> I am trying to run reg-feat2anat and having a bit of an odd problem. It > runs but doesn't produce a anat2exf.register.dat. If I look at the > anat2exf.register.dat.fslregister.log file I see right at the beginning it > fail with: > >> > >> /data/results/genDIS > >> mri_convert ERROR: could not determine file for > > /data/freesurfer_recons/HierGENDIS/WaisgenDIS600/mri/ERROR: > /data/results/genDIS/WaisgenDIS600/gendistask_full_search.feat/reg/freesurfer/tmp/refvol.fslregister.nii > >> mri_convert ERROR: could not determine file for > /data/freesurfer_recons/HierGENDIS/WaisgenDIS600/mri/ERROR: > /data/results/genDIS/WaisgenDIS600/gendistask_full_search.feat/reg/freesurfer/tmp/refvol.fslregister.nii > >> > >> mri_convert: extra arguments ("not" and following) > >> > >> type mri_convert -u for usage > >> > >> This is running on a SGE cluster using Ubuntu 12.04.1, FreeSurfer 5.3 > and FSL 5.0.4 which made me think it is is similar to Sal's problem > recently. So I added "set fsvol = brainmask" and that seems to have fixed > it. Is there a different fix I can make to solve this? > >> > >> Cheers, > >> > >> -Morgan > >> > >> > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> > >> > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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