Hi Morgan
that is odd. I think Doug is traveling which may slow down his normal
rapid response time.
Bruce
On Sat, 27 Jul 2013, Morgan Hough wrote:
> Hi there,
>
> I am trying to run reg-feat2anat and having a bit of an odd problem. It runs
> but doesn't produce a anat2exf.register.dat. If I look at the
> anat2exf.register.dat.fslregister.log file I see right at the beginning it
> fail with:
>
> /data/results/genDIS
> mri_convert ERROR: could not determine file for
/data/freesurfer_recons/HierGENDIS/WaisgenDIS600/mri/ERROR:
/data/results/genDIS/WaisgenDIS600/gendistask_full_search.feat/reg/freesurfer/tmp/refvol.fslregister.nii
> mri_convert ERROR: could not determine file for
> /data/freesurfer_recons/HierGENDIS/WaisgenDIS600/mri/ERROR:
> /data/results/genDIS/WaisgenDIS600/gendistask_full_search.feat/reg/freesurfer/tmp/refvol.fslregister.nii
>
> mri_convert: extra arguments ("not" and following)
>
> type mri_convert -u for usage
>
> This is running on a SGE cluster using Ubuntu 12.04.1, FreeSurfer 5.3 and FSL
> 5.0.4 which made me think it is is similar to Sal's problem recently. So I
> added "set fsvol = brainmask" and that seems to have fixed it. Is there a
> different fix I can make to solve this?
>
> Cheers,
>
> -Morgan
>
>
>
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>
>
>
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