Thanks Bruce! Panos
> Hi Panos > > that means that you reran one of the surfaces but not the other. Try > running recon-all -make all, which should check to see if the > surfaces/volumes are up-to-date and rebuild them if needed. Note that > having an euler number of 2 doesn't mean the surfaces match, they also > need > to have the same number of edges, vertices and faces. > > cheers > Bruce > > > On Wed, 25 Sep > 2013, pfot...@nmr.mgh.harvard.edu wrote: > >> Hi FS Community, >> >> I have been using control points and adding wm voxels in the wm.mgz >> volume >> of a subject, in order to fix the reconstruction, and after doing so for >> a >> number of times, when I tried to run the command: >> >> tkmedit <subj_ID> brainmask.mgz -aux wm.mgz -surfs >> >> the following message popped up: >> >> Reading 574 control points... >> Converting main surface: 100% done. >> Converting main surface: 100% done. >> mrisReadTriangleFile(/cluster/ichresearch/Petechial/MEG/1424_02042011_CTh_fixed/surf/lh.pial): >> surface doesn't match >> /cluster/ichresearch/Petechial/MEG/1424_02042011_CTh_fixed/surf/lh.white >> >> No such file or directory >> mrisReadTriangleFile failed. >> >> No such file or directory >> Converting main surface: 100% done. >> Converting main surface: 100% done. >> Converting pial surface: 100% done. >> Reading 574 control points... >> Reading /usr/local/freesurfer/stable5_3_0/tktools/tkm_common.tcl >> Reading /usr/local/freesurfer/stable5_3_0/tktools/tkm_wrappers.tcl >> Reading /usr/local/freesurfer/stable5_3_0/lib/tcl/fsgdfPlot.tcl >> Reading /usr/local/freesurfer/stable5_3_0/tktools/tkUtils.tcl >> % >> >> >> and after tkmedit loads, the lh.pial is not shown. I ran >> mris_euler_number >> on lh.pial and lh.white and they are both equal to 2 as they should. >> >> I was wondering whether you happen to know why is this happening and how >> to fix it. (I am using FS 5.3) >> >> Thank you for your time! >> >> Best, >> Panos >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
