Hi FS Community, I have been using control points and adding wm voxels in the wm.mgz volume of a subject, in order to fix the reconstruction, and after doing so for a number of times, when I tried to run the command:
tkmedit <subj_ID> brainmask.mgz -aux wm.mgz -surfs the following message popped up: Reading 574 control points... Converting main surface: 100% done. Converting main surface: 100% done. mrisReadTriangleFile(/cluster/ichresearch/Petechial/MEG/1424_02042011_CTh_fixed/surf/lh.pial): surface doesn't match /cluster/ichresearch/Petechial/MEG/1424_02042011_CTh_fixed/surf/lh.white No such file or directory mrisReadTriangleFile failed. No such file or directory Converting main surface: 100% done. Converting main surface: 100% done. Converting pial surface: 100% done. Reading 574 control points... Reading /usr/local/freesurfer/stable5_3_0/tktools/tkm_common.tcl Reading /usr/local/freesurfer/stable5_3_0/tktools/tkm_wrappers.tcl Reading /usr/local/freesurfer/stable5_3_0/lib/tcl/fsgdfPlot.tcl Reading /usr/local/freesurfer/stable5_3_0/tktools/tkUtils.tcl % and after tkmedit loads, the lh.pial is not shown. I ran mris_euler_number on lh.pial and lh.white and they are both equal to 2 as they should. I was wondering whether you happen to know why is this happening and how to fix it. (I am using FS 5.3) Thank you for your time! Best, Panos _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
