Thank you very much Bruce, I have used mris_anatomical_stats and it worked beautifully.
Cheers Jesus -----Original Message----- From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: Thursday, August 29, 2013 1:19 PM To: Gomar, Jesus Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: Re: [Freesurfer] Peirhinal cortex thickness Hi Jesus I'm not sure if it is computed by default, but you can use mris_anatomical_stats with the -l <label file> option to compute it. cheers Bruce On Thu, 29 Aug 2013, Gomar, Jesus wrote: > Dear all, > > I am interested on getting thickness measures of the perirhinal cortex. > I am using version 5.3 and I am aware that a label for the perirhinal cortex > has been created in version 5.2. > However, when I run recon-all I don't get thickness measures of the > perirhinal cortex (just as I do for instance for entorhinal cortex of middle > temporal cortex) > In summary, my questions are: > 1. Is the calculation of perirhinal cortex thickness automated in version > 5.3? > 2. If not, Can I get some info on how to proceed to obtain this measure? > > Thanks in advance for any advice! > > > Jesus J. Gomar > > > > > The information contained in this electronic e-mail transmission and any > attachments are intended only for the use of the individual or entity to > whom or to which it is addressed, and may contain information that is > privileged, confidential and exempt from disclosure under applicable law. If > the reader of this communication is not the intended recipient, or the > employee or agent responsible for delivering this communication to the > intended recipient, you are hereby notified that any dissemination, > distribution, copying or disclosure of this communication and any attachment > is strictly prohibited. If you have received this transmission in error, > please notify the sender immediately by telephone and electronic mail, and > delete the original communication and any attachment from any computer, > server or other electronic recording or storage device or medium. Receipt by > anyone other than the intended recipient is not a waiver of any > attorney-client, physician-patient or other privilege. > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. The information contained in this electronic e-mail transmission and any attachments are intended only for the use of the individual or entity to whom or to which it is addressed, and may contain information that is privileged, confidential and exempt from disclosure under applicable law. If the reader of this communication is not the intended recipient, or the employee or agent responsible for delivering this communication to the intended recipient, you are hereby notified that any dissemination, distribution, copying or disclosure of this communication and any attachment is strictly prohibited. If you have received this transmission in error, please notify the sender immediately by telephone and electronic mail, and delete the original communication and any attachment from any computer, server or other electronic recording or storage device or medium. Receipt by anyone other than the intended recipient is not a waiver of any attorney-client, physician-patient or other privilege. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
