Dear List, I have a couple questions I need help with.
First, I am trying to constrain my subcortical (mni305) analysis with mri_glmfit to a certain ROI. Can I run mri_glmfit with the --mask flag and use a volume mask to constrain it to this space? Second, if so, then how do I create a mask from the subcortical activation map I have from my fsfast analysis. Is there a way like in tksurfer to add all voxels up to a certain threshold to a mask? Thanks! Best, Omar _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
