On 08/29/2013 02:54 PM, Omar Singleton wrote: > Dear List, > > I have a couple questions I need help with. > > First, I am trying to constrain my subcortical (mni305) analysis with > mri_glmfit to a certain ROI. Can I run mri_glmfit with the --mask flag and > use a volume mask to constrain it to this space? Yes. > > Second, if so, then how do I create a mask from the subcortical activation > map I have from my fsfast analysis. Is there a way like in tksurfer to add > all voxels up to a certain threshold to a mask? You can use mri_binarize. You can pick the threshold and sign you want to use for the mask doug > > Thanks! > > Best, > Omar > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >
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