Hi Chris, I believe if you do not include the -clean-bm flag then it should have an effect when run multiple times. You should make a copy of the brainmask.mgz and brainmask.gcuts.mgz to compare before/after to verify if there are any differences. -Louis
On Tue, 30 Jul 2013, Chris Watson wrote: > Hello, > Is there any value in running recon-all with "-gcut" multiple times? e.g. in > a case where skull/dura continues to be > left on brainmask.mgz? > > Thanks, > Chris > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
