Hi Jonathan
so you lose that entire gyrus? What are the intensity values of the wm in
the brain.mgz in that region? And it's not present in the wm.mgz either?
That means it's a segmentation problem not a topology one (which is what
I would have guessed)
Bruce
On Fri, 28 Jun 2013, Jonathan Holt wrote:
Hi all,
I'm having a bit of trouble with one particular subject for which we brains
for 4-5 different time points. The pial surface is consistently misplaced in
the same area, see attached main/aux volume images. I'm hesitant to manually
replace the white matter myself as I fear it wouldn't be as accurate.
Suggestions on other methods to fix this?
The problem is always in the LH temporal right around the lateral inferior
ventricle and the fusiform and other subcortical structures.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
