I am running version 5.3- the latest version. I also tried running the codes on v5.0 and got the same result. Is there any way I can change the color table so that the colors of the parcellation are unique?
Thanks, Tina -----Original Message----- From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: Wednesday, May 29, 2013 8:41 PM To: Tina Jeon Subject: Re: [Freesurfer] mris_divide_parcellation color table error Sure On May 29, 2013, at 9:36 PM, Tina Jeon <tina.j...@utsouthwestern.edu> wrote: > The colors are visually different by a shade then loop every 4 or so colors. > I think the color table may be running on a loop? I can send the annot and > surface file if you need that as well. > > Best, > Tina > > ________________________________________ > From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] > Sent: Wednesday, May 29, 2013 8:02 PM > To: Tina Jeon > Subject: Re: [Freesurfer] mris_divide_parcellation color table error > > p.s. can you send me the splittable text file ? I seem to have deleted > it. I'll try to test it out tomorrow On Thu, 30 May 2013, Tina Jeon > wrote: > >> Yes same result as with freeview. >> >> Sent from my iPhone >> >> On May 29, 2013, at 7:46 PM, "Bruce Fischl" >> <fis...@nmr.mgh.harvard.edu> >> wrote: >> >> Hi Tina >> Did you try visualizing it in tksurfer? >> Bruce >> >> >> >> On May 29, 2013, at 7:22 PM, Tina Jeon <tina.j...@utsouthwestern.edu> >> wrote: >> >> Hello freesurfers, >> >> >> >> I am trying to create a figure similar to the Hagmann et >> al 2008 paper with 998 rois overlaid onto the surface, >> however, I am finding that there is no random, unique >> color for each parcellation unit like described in the >> help file for mris_divide_parcellation. >> >> >> >> I have attached a snapshot of my annotation file overlaid >> onto the surface, as you can see, the color iterates the >> same/similar color for a particular label. Can you tell me >> what I am doing wrong? Is there a pre-existing atlas as >> described in the Hagmann paper? >> >> >> >> My input: >> >> mris_ca_label –t ./FreeSurferColorLUT.txt subject_name lh >> >> ./lh.sphere.reg$FREESURFER_HOME/average/lh.curvature.buckner40.filled.desikan_killany.2010 >> -03-25.gcs ./lh.aparc.998rois.annot >> >> >> >> mris_divide_parcellation subject_name lh >> ./lh.aparc.998rois.annot ./splittable.txt >> ./lh.annotation.998rois_26.annot >> >> >> >> >> >> Many thanks, >> >> >> >> Tina Jeon, MS >> >> UT Southwestern Medical Center ‘14 >> >> >> >> >> _____________________________________________________________________ >> _______ >> >> UT Southwestern Medical Center >> The future of medicine, today. >> >> <neonate_buckner40_atlas.png> >> >> <splittable.txt> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> The information in this e-mail is intended only for the person to >> whom it is addressed. If you believe this e-mail was sent to you in >> error and the e-mail contains patient information, please contact the >> Partners Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error but does not contain patient information, please contact >> the sender and properly dispose of the e-mail. >> >> >> > <splittable.txt> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
