Could you provide the recon-all.log file? -Zeke
On 05/30/2013 10:24 AM, Gennan Chen wrote: > Does 5.3 assume recon-all -all will always run first? Since ribbon.mgz > will not get created till autorecon3. In V4, that is part of autorecon2 > though. > > Gen > > > On Thu, May 30, 2013 at 12:24 AM, Mehul Sampat <mpsam...@gmail.com > <mailto:mpsam...@gmail.com>> wrote: > > ps: i believe my error is the same as the one in this thread: > > > http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg28047.html > > > Mehul > > > On Thu, May 30, 2013 at 12:13 AM, Mehul Sampat <mpsam...@gmail.com > <mailto:mpsam...@gmail.com>> wrote: > > Hi Folks, > I am running recon-all with -autorecon1 > -autorecon2, -nomotioncor -notal-check -nonuintensitycor > (this is with fs version 5.3) > it almost runs through but toward the end, when mri_segstats is > called I get the error message: > .../mri/ribbon.mgz, -1): could not open file > any ideas why this could be occurring ? > Thanks > Mehul > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
