No, it does not. doug
On 05/15/2013 04:54 PM, jwa...@nmr.mgh.harvard.edu wrote: > Thanks Nick, > I have group of subject's for which recon-all was run in versions prior > to v5.2, but subsequent steps (such as mri_cor2label, func2roi-sess, > etc) were run in v5.2. Does the v5.2 bug affect steps beyond > recon-all? > > Thanks, > Jeff > > > Freesurfers, >> The new version of Freesurfer, v5.3, is available for download! >> >> Recall from our prior posting that this is intended to >> replace v5.2, which had a problem with pial and white surface >> generation affecting thickness and area measures. >> Users should not use v5.2 for any surface-based studies. >> >> For a list of what v5.3 contains, see this page: >> >> http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes >> >> If you have already run data through v5.2, and do not want >> to re-run everything again but only what is necessary, then run >> the following on your subjects using v5.3: >> >> recon-all -s <subjid> \ >> -white \ >> -smooth2 \ >> -inflate2 \ >> -autorecon3 >> >> This will create new surfaces and surface data. >> Note that if you choose to re-run the entire stream (-all), >> the aseg stats will differ from v5.2, but our tests show this >> difference to be insignificant. >> >> To download v5.3, see this page: >> >> http://surfer.nmr.mgh.harvard.edu/fswiki/Download >> >> And remember our home page is here: >> >> http://surfer.nmr.mgh.harvard.edu >> >> And list info is here: >> >> http://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> Thank you to everyone who downloaded and tested the beta release of >> v5.3. We apologize for the hassle and expense of releasing a >> problematic v5.2. We have improved our testing in the process. >> >> The Freesurfites >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
