Thanks Nick,
I have group of subject's for which recon-all was run in versions prior
to v5.2, but subsequent steps (such as mri_cor2label, func2roi-sess,
etc) were run in v5.2. Does the v5.2 bug affect steps beyond
recon-all?
Thanks,
Jeff
Freesurfers,
>
> The new version of Freesurfer, v5.3, is available for download!
>
> Recall from our prior posting that this is intended to
> replace v5.2, which had a problem with pial and white surface
> generation affecting thickness and area measures.
> Users should not use v5.2 for any surface-based studies.
>
> For a list of what v5.3 contains, see this page:
>
> http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes
>
> If you have already run data through v5.2, and do not want
> to re-run everything again but only what is necessary, then run
> the following on your subjects using v5.3:
>
> recon-all -s <subjid> \
> -white \
> -smooth2 \
> -inflate2 \
> -autorecon3
>
> This will create new surfaces and surface data.
> Note that if you choose to re-run the entire stream (-all),
> the aseg stats will differ from v5.2, but our tests show this
> difference to be insignificant.
>
> To download v5.3, see this page:
>
> http://surfer.nmr.mgh.harvard.edu/fswiki/Download
>
> And remember our home page is here:
>
> http://surfer.nmr.mgh.harvard.edu
>
> And list info is here:
>
> http://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
> Thank you to everyone who downloaded and tested the beta release of
> v5.3. We apologize for the hassle and expense of releasing a
> problematic v5.2. We have improved our testing in the process.
>
> The Freesurfites
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
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