Dear FreeSurfers,
I want to convert cortical labels to volumetric masks, and I run the following
commands:
1. tkregister2 �Cmov sub/mri/rawavg.mgz �Cnoedit �Cs sub �Cregheader �Creg
./register.dat
2. mri_label2vol �Clabel ./lh.entorhinal.label �Ctemp sub/mri/rawavg.mgz
�Csubject sub �Chemi lh �Co sub_lh_entorhinal.nii.gz �Cproj frac 0 1 .1
�Cfillthresh .3 �Creg ../mri/register.dat
if I do not run the recon-all command, could I change the rawavg.mgz to sub.nii
(original data)?
The second problem is that when I convert the annotation file to volumetric
mask, whether I should convert the file to labels using mri_annotation2label
first, then run the commands as decribed above, or there is a way that could
convert the annotation file to volumetric mask directly?
The last problem is that how to convert the .curv file and .w file to volumetic
mask?
Any help will be very appreciated.
Best wishes,
Meng
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
