Do you know if that version works outside of Virtualbox?
On 03/29/2013 03:13 PM, Tudor Popescu wrote: > I'm running freesurfer-Linux-centos4-stable-pub-v5.1.0, on Windows XP > SP3, through Virtualbox 4.2.10. QDEC version is 1.4 > THanks for your help > > On 29 March 2013 17:33, Douglas N Greve <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > If yyou just type mri_concat at the command line and nothting > happens, then something is definitely wrong. What system are you > running on? > > > > On 03/28/2013 04:17 PM, Tudor Popescu wrote: > > I tried running it by itself, to remind me of the syntax, so > that I can do a simple concatenation to see if it works. But > after typing mri_concat and hitting Enter, nothing happens, > I'm just returned to the command prompt. > > The same happens if I type the following command, from the > folder containing the two input files > mri_concat -i C01.nii.gz -i C02.nii.gz -o test.nii.gz > > Could this indicate something is wrong with the mri_concat > command itself? > > On 28 March 2013 20:01, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>> wrote: > > > Sorry, I've totally lost track of this thread. Are you > able to run > mri_concat outside of QDEC? > > > On 03/28/2013 03:51 PM, Tudor Popescu wrote: > > Still stuck with this error in my QDEC analysis attempt, > at my wit's > > end, could anyone help please? Thanks! > > Tudor > > > > On 26 March 2013 20:35, Tudor Popescu <tud...@gmail.com > <mailto:tud...@gmail.com> > <mailto:tud...@gmail.com <mailto:tud...@gmail.com>> > > <mailto:tud...@gmail.com <mailto:tud...@gmail.com> > <mailto:tud...@gmail.com <mailto:tud...@gmail.com>>>> wrote: > > > > Just giving this thread a new bump, as /again /I am > receiving this > > error from mri_concat, upon pressing the Analyze > button in QDEC. > > Usual suspects are ruled out: $SUBJECTS_DIR is set > correctly > (and > > includes a copy of the fsaverage folder) and all files > included in > > the error are at the expected path. Screenshot attached. > > > > > > On 18 March 2013 11:20, Tudor Popescu > <tud...@gmail.com <mailto:tud...@gmail.com> > <mailto:tud...@gmail.com <mailto:tud...@gmail.com>> > > <mailto:tud...@gmail.com <mailto:tud...@gmail.com> > <mailto:tud...@gmail.com <mailto:tud...@gmail.com>>>> wrote: > > > > Hi Andreas > > > > I don't think it's about the OS (I'm on WInXP > SP3, 32 bit, > > hosting Linux using Vritualbox), but about the > environment > > variables, even though from what I could see, I > had them all > > correctly set. I gave up and am just running this > through FSL.. > > > > Tudor > > > > > > On 18 March 2013 11:13, Andreas Berger > > <n0642...@students.meduniwien.ac.at > <mailto:n0642...@students.meduniwien.ac.at> > <mailto:n0642...@students.meduniwien.ac.at > <mailto:n0642...@students.meduniwien.ac.at>> > > <mailto:n0642...@students.meduniwien.ac.at > <mailto:n0642...@students.meduniwien.ac.at> > > <mailto:n0642...@students.meduniwien.ac.at > <mailto:n0642...@students.meduniwien.ac.at>>>> wrote: > > > > On Friday, February 01, 2013 17:12:00 Tudor > Popescu > wrote: > > > Hi Doug > > > > > > Strangely, the basic mri_concat command now > worked, and > > so did the full > > > one. I think I initially had a "\" at the > end of my > > command, just after the > > > file name, which should not have been > there; although > > having tried again > > > with the backslash reinstated at the end, > the command > > still worked. Also, > > > the Analyze in the QDEC GUI now completes > without > error > > as well. > > > > > > It's quite frustrating that I still don't > know why it > > hasn't been working > > > all this time, especially since I didn't > really do > > anything different now > > > (that I was aware of!) and the files were > located > on the > > same partition > > > (Virtualbox's shared folder). > > > > > > Anyhow, thanks again for your kind help! > > > > > > Tudor > > > > > > On 31 January 2013 20:36, Douglas N Greve > > <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>>> wrote: > > > > On 01/31/2013 12:30 PM, Tudor Popescu wrote: > > > >> Hi Doug, > > > >> > > > >> I'm not sure why that does not make sense, > shouldn't > > the input of > > > >> mri_concat be several > to-be-concatenated files > rather > > than a single > > > >> file? > > > > > > > > Sorry, I did not mean to imply that the > command line > > was wrong, rather > > > > that the behavior did not make sense -- > it should > > print *something* to > > > > the terminal. It does make sense to have > multiple > > files, but it will > > > > also work with a single file. I just > suggested > this to > > make things > > > > simpler. > > > > > > > >> Anyway, after trying out the command > with only > one of > > the files from the > > > >> tutorial, > > > >> > > > >> /mri_concat --debug > > > >> > /media/Dell/_FS/buckner_data/**subjects/140/surf/lh.* > > > >> *thickness.fwhm10.fsaverage.mgh --o > > /media/Dell/_FS/buckner_data/** > > > >> subjects/qdec/y.mgh/ > > > >> > > > >> > > > >> ..the same thing happens, namely it > returns to the > > command prompt, with > > > >> no message whatsoever. > > > >> > > > >> What could be wrong? As I mentioned, > all those MGH > > files are at the > > > >> expected path. Thanks again for your help! > > > > > > > > What happens if you type mri_concat with no > options at > > all? > > > > > > > >> Tudor > > > >> > > > >> > > > >> On 20 December 2012 05:24, Douglas Greve > > > >> <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>><mailto: > > > >> > > > >> gr...@nmr.mgh.harvard.**edu > > <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>>>>> wrote: > > > >> That does not make sense. Try using > only one > > input file. Also, put > > > >> --debug as the first option. > > > >> doug > > > >> > > > >> On 12/19/12 8:32 AM, Tudor Popescu > wrote: > > > >>> Hi Doug, > > > >>> So the full command is > > > >>> > > > >>> mri_concat > > > >>> > /media/Dell/_FS/buckner_data/**subjects/140/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/049/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/141/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/084/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/021/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/093/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/080/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/091/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/040/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/017/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/138/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/106/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/108/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/092/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/124/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/129/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/103/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/130/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/039/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/123/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/095/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/067/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/004/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/133/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/097/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/073/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/149/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/045/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/136/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/144/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/032/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/131/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/145/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/111/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/102/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/074/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/114/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/008/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/128/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/099/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> --o > > > >>> > > /media/Dell/_FS/buckner_data/**subjects/qdec/lh-thickness-** > > > >>> > > > >>> age-fwhm10/y.mgh > > > >>> > > > >>> --debug > > > >>> > > > >>> ..however, as soon as I press > Enter, I'm just > > taken to the > > > >>> command prompt again, with no output > whatsoever! > > Am I calling > > > >>> mri_concat wrongly?! > > > >>> > > > >>> Tudor > > > >>> > > > >>> On 18 December 2012 17:15, Douglas > N Greve > > > >>> <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>> > > > >>> <mailto:gr...@nmr.mgh.harvard > <mailto:gr...@nmr.mgh.harvard> > <mailto:gr...@nmr.mgh.harvard <mailto:gr...@nmr.mgh.harvard>>. > > <mailto:gr...@nmr.mgh.harvard > <mailto:gr...@nmr.mgh.harvard> > <mailto:gr...@nmr.mgh.harvard > <mailto:gr...@nmr.mgh.harvard>>.>**edu<gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>>>>> > > > >>> > > > >>> wrote: > > > >>> Hi Tudor, > > > >>> Can you run mri_concat from the > command line > > with the --debug > > > >>> option > > > >>> first. Send us the FULL > command line > and the > > full terminal > > > >>> output. > > > >>> doug > > > >>> > > > >>> On 12/18/2012 09:35 AM, Tudor > Popescu > wrote: > > > >>> > Hello everyone, > > > >>> > > > > >>> > I tried doing the QDEC group > analysis > > tutorial, however > > > >>> > > > >>> after doing > > > >>> > > > >>> > everything as instructed in the > tutorial, > > when pressing > > > >>> > > > >>> Analyze I get > > > >>> > > > >>> > the error message: > > > >>> > > > > >>> > /Error in Analyze: command > failed: > mri_concat > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/140/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > /media/Dell/_FS/buckner_data/**subjects/049/surf/lh.** > > > >>> > > > >>> thickness.fwhm10.fsaverage.mgh > > > >>> > > > >>> > (..)/ > > > >>> > > > > >>> > ..even though those files > are all > > accessible there! I > > > >>> > > > >>> pasted that same > > > >>> > > > >>> > mri_concat manually into the > terminal, > > however no output is > > > >>> > > > >>> produced > > > >>> > > > >>> > at the command prompt, nor > any files are > > created. > > > >>> > > > > >>> > In previous attempts, I used > to also get > > this error > > > >>> > > > > >>> > /" .ERROR: > QdecProject::VerifySubjects: > > Couldn't find > > > >>> > > > >>> subject '032' in > > > >>> > > > >>> > SUBJECTS_DIR "/ > > > >>> > /Syntax error: Bad fd number"/ > > > >>> > > > > >>> > after following the sh/bash > workaround > > from this > > > >>> > > > >>> > > > <https://mail.nmr.mgh.harvard.**edu/pipermail/freesurfer/2008-* > > > >>> * > > > >>> > > > >>> > > > > October/008618.html<https://mail.nmr.mgh.harvard.edu/pipermail/freesurf > > > >>> er/2008-October/008618.html> > > > >>> > > > >>> >previous > > > >>> > > > > >>> > thread, I no longer get that > error, > > however get stuck with > > > >>> > > > >>> the error > > > >>> > > > >>> > mentioned above. > > > >>> > > > > >>> > My SUBJECTS_DIR already > contains a > copy of > > the default > > > >>> > > > >>> subjects folder. > > > >>> > > > >>> > Debug info below. Any help > greatly > > appreciated! > > > >>> > Tudor > > > >>> > > > > >>> > -------- > > freesurfer-Linux-centos4-**stable-pub-v5.1.0 > > > >>> > -------- Setting up > environment for > > FreeSurfer/FS-FAST (and > > > >>> > FSL) FREESURFER_HOME > > /home/virtualuser/freesurfer > > > >>> > FSFAST_HOME > > /home/virtualuser/freesurfer/**fsfast > > > >>> > FSF_OUTPUT_FORMAT nii.gz > > > >>> > SUBJECTS_DIR > > /media/Dell/_FS/buckner_data/**subjects > > > >>> > MNI_DIR > /home/virtualuser/freesurfer/**mni > > > >>> > > > > >>> > > > > >>> > > > > >>> > > > ______________________________**_________________ > > > >>> > Freesurfer mailing list > > > >>> > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>>> > > > >>> > > > >>> <mailto:freesur...@nmr.mgh > <mailto:freesur...@nmr.mgh> > <mailto:freesur...@nmr.mgh <mailto:freesur...@nmr.mgh>>. > > <mailto:freesur...@nmr.mgh > <mailto:freesur...@nmr.mgh> > <mailto:freesur...@nmr.mgh > <mailto:freesur...@nmr.mgh>>.>**harvard.edu > <http://harvard.edu> <http://harvard.edu> > > <http://harvard.edu><freesur...@nmr.mgh.har > > > >>> vard.edu <http://vard.edu> > <http://vard.edu> <http://vard.edu>> > > > > >>> > > > >>> > > > https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/** > > > >>> > > > >>> > > > > freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > >>> > > > > >>> > > > >>> -- > > > >>> Douglas N. Greve, Ph.D. > > > >>> MGH-NMR Center > > > >>> gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>> > > > >>> <mailto:gr...@nmr.mgh.harvard > <mailto:gr...@nmr.mgh.harvard> > <mailto:gr...@nmr.mgh.harvard <mailto:gr...@nmr.mgh.harvard>>. > > <mailto:gr...@nmr.mgh.harvard > <mailto:gr...@nmr.mgh.harvard> > <mailto:gr...@nmr.mgh.harvard > <mailto:gr...@nmr.mgh.harvard>>.>**edu<gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>>> > > > >>> > > > >>> > > > >>> Phone Number: 617-724-2358 > > > >>> Fax: 617-726-7422 > > > >>> > > > >>> Bugs: > > > >>> > surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting> > <http://surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting> > > > > <http://surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting><http://surfer > > > >>> > .nmr.mgh.harvard.edu/fswiki/BugReporting > <http://nmr.mgh.harvard.edu/fswiki/BugReporting> > <http://nmr.mgh.harvard.edu/fswiki/BugReporting> > > > <http://nmr.mgh.harvard.edu/fswiki/BugReporting>> > > > >>> > > > <http://surfer.nmr.mgh.**harvard.edu/fswiki/**BugReporting > <http://harvard.edu/fswiki/**BugReporting> > <http://harvard.edu/fswiki/**BugReporting> > > <http://harvard.edu/fswiki/**BugReporting><htt > > > >>> > > > p://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>> > > > >>> > > > >>> FileDrop: > > > >>> > > www.nmr.mgh.harvard.edu/**facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/**facility/filedrop/index.html> > > <http://www.nmr.mgh.harvard.edu/**facility/filedrop/index.html> > > > > <http://www.nmr.mgh.harvard.edu/**facility/filedrop/index.html><http://w > > > >>> > ww.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://ww.nmr.mgh.harvard.edu/facility/filedrop/index.html> > <http://ww.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > > <http://ww.nmr.mgh.harvard.edu/facility/filedrop/index.html>> > > > >>> > > > <http://www.nmr.mgh.harvard.**edu/facility/filedrop/index.**ht > > > >>> > > > ml<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > > >>> > > > >>> > > > >>> Outgoing: > > > >>> > > ftp://surfer.nmr.mgh.harvard.**edu/transfer/outgoing/flat/** > > > >>> > > > >>> greve/ > > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > > > >>> > > > >>> > ______________________________**_________________ > > > >>> Freesurfer mailing list > > > >>> Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>>> > > > >>> <mailto:freesur...@nmr.mgh > <mailto:freesur...@nmr.mgh> > <mailto:freesur...@nmr.mgh <mailto:freesur...@nmr.mgh>>. > > <mailto:freesur...@nmr.mgh > <mailto:freesur...@nmr.mgh> > <mailto:freesur...@nmr.mgh > <mailto:freesur...@nmr.mgh>>.>**harvard.edu > <http://harvard.edu> <http://harvard.edu> > > <http://harvard.edu><freesur...@nmr.mgh.har > > > >>> vard.edu <http://vard.edu> > <http://vard.edu> <http://vard.edu>> > > > > >>> > > > >>> > > > >>> > > > https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfe > > > >>> > > > r<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > >>> > > > >>> > > > >>> The information in this e-mail > is intended > > only for the > > > >>> person to whom it is > > > >>> addressed. If you believe this e-mail was > > sent to you in > > > >>> error and the e-mail > > > >>> contains patient information, > please > contact > > the Partners > > > >>> Compliance HelpLine at > > > >>> > > > http://www.partners.org/**complianceline<http://www.partners.or > > > >>> g/complianceline>. If the e-mail was > sent to > you in > > error > > > >>> but does not contain patient > information, > > please contact the > > > >>> sender and properly > > > >>> dispose of the e-mail. > > > > > > > > -- > > > > Douglas N. Greve, Ph.D. > > > > MGH-NMR Center > > > > gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>> > > > > Phone Number: 617-724-2358 > > > > Fax: 617-726-7422 > > > > > > > > Bugs: > > > > > surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting> > <http://surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting> > > > > <http://surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting><http://surfer.nmr.mgh.h > > > > arvard.edu/fswiki/BugReporting > <http://arvard.edu/fswiki/BugReporting> > <http://arvard.edu/fswiki/BugReporting> > > <http://arvard.edu/fswiki/BugReporting>> > FileDrop: > > > > > www.nmr.mgh.harvard.edu/**facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/**facility/filedrop/index.html> > > <http://www.nmr.mgh.harvard.edu/**facility/filedrop/index.html> > > > > <http://www.nmr.mgh.harvard.edu/**facility/filedrop/index.html><http://www.nmr.mg > > > > > h.harvard.edu/facility/filedrop/index.html > <http://h.harvard.edu/facility/filedrop/index.html> > <http://h.harvard.edu/facility/filedrop/index.html> > > > <http://h.harvard.edu/facility/filedrop/index.html>> > Outgoing: > > > > > > ftp://surfer.nmr.mgh.harvard.**edu/transfer/outgoing/flat/** > > greve/ > > > > > > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > > > > Hi surfers, > > > > sorry to bump this, but i seem to have the exact > same problem: > > > > - qdec informs me that mri_concat failed > > - mri_concat itself produces no output at all > > - also not with --debug or without any > arguments at all > > - however, mri_concat has a non-zero exit status > > > > btw, i also ran into the sh syntax error, > which i worked > > around by linking sh > > to bash. i assume this is not directly > related, but > maybe > > Tudor and i share > > the same platform, to which both problems > are related? > > > > i am using the 32bit centOS4 build on debian 7. > > > > > > greetings from Vienna > > Andreas > > > > > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the > person to > whom it is > addressed. If you believe this e-mail was sent to you in > error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
