Hi Zeke, was wondering if you saw my message. VirtualBox only seems to accept VDI files, so it seems I cannot make use of the new 5.2 version, which is downloadable only as a .TAR.GZ Sorry this is proving so difficult.. T
On 1 April 2013 15:29, Tudor Popescu <tud...@gmail.com> wrote: > Thanks Zeke. I tried upgrading to the latest FS version, 5.2.0, but I see > that the available download > <ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.2.0/freesurfer-Linux-centos4-stable-pub-v5.2.0.tar.gz>is > only in .tar.fz format rather than in .VDI format, as > v5.1.0<ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.1.0/freesurfer-Virtualbox-linux-x86-stable-pub-v5.1.0-full.vdi>was > (and the .TAR archive does not contain a .VDI file inside it). > Virtualbox seems to only accept the VDI format. Apologies if there's > something obvious here that I"m not seeing.. > > And yes, it's true that I eventually did get mri_concat to work in QDEC, > however that was only after repeatedly trying the same thing, I hadn't > really changed anything. My guess is that, when I used to get that error > from QDEC/mri_concat in the past, it was another case of mri_concat not > responding to the command line. This could be, as Doug says, a problem with > my Virtualbox, but unfortunately I don't know what else to do with it, and > I've been wanting to complete this analysis for weeks now... :( > > > On 1 April 2013 15:24, <zkauf...@nmr.mgh.harvard.edu> wrote: > >> Hi Tudor, >> >> That is unfortunate. You mention in the email below dated (Feb 1) that you >> got mri_concat working for you. If it worked for you then, but doesnt now, >> and nothing changed in the meantime, Im not sure there's much we can do to >> diagnose the issue. The mri_concat binary I sent you works in our CentOS4 >> environment and as well as the countless others who have downloaded >> freesurfer 5.1 for CentOS4. Are you required to use 5.1 for your >> analysis? Freesurfer 5.2 was released earlier this month and can be >> downloaded here: >> >> http://surfer.nmr.mgh.harvard.edu/fswiki/Download >> >> -Zeke >> >> >> >> > Hi Zeke, >> > >> > Thanks very much for this, I replaced the file with the one you sent, >> but >> > now after typing a test command: >> > mri_concat -i C01.nii.gz -i C02.nii.gz -o test.nii.gz >> > or indeed after typing mri_concat on its own, I always get the message >> > "Killed" at the command line! >> > >> > Tudor >> >> ---------------------------- Original Message ---------------------------- >> Subject: Re: [Freesurfer] Error from mri_concat while using QDEC >> From: "Tudor Popescu" <tud...@gmail.com> >> Date: Fri, February 1, 2013 12:12 pm >> To: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> >> Cc: "free surfer" <freesurfer@nmr.mgh.harvard.edu> >> -------------------------------------------------------------------------- >> >> Hi Doug >> >> Strangely, the basic mri_concat command now worked, and so did the full >> one. I think I initially had a "\" at the end of my command, just after >> the >> file name, which should not have been there; although having tried again >> with the backslash reinstated at the end, the command still worked. Also, >> the Analyze in the QDEC GUI now completes without error as well. >> >> It's quite frustrating that I still don't know why it hasn't been working >> all this time, especially since I didn't really do anything different now >> (that I was aware of!) and the files were located on the same partition >> (Virtualbox's shared folder). >> >> Anyhow, thanks again for your kind help! >> >> Tudor >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >
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