Hi Tudor, Can you run mri_concat from the command line with the --debug option first. Send us the FULL command line and the full terminal output. doug
On 12/18/2012 09:35 AM, Tudor Popescu wrote: > Hello everyone, > > I tried doing the QDEC group analysis tutorial, however after doing > everything as instructed in the tutorial, when pressing Analyze I get > the error message: > > /Error in Analyze: command failed: mri_concat > /media/Dell/_FS/buckner_data/subjects/140/surf/lh.thickness.fwhm10.fsaverage.mgh > > /media/Dell/_FS/buckner_data/subjects/049/surf/lh.thickness.fwhm10.fsaverage.mgh > > (..)/ > > ..even though those files are all accessible there! I pasted that same > mri_concat manually into the terminal, however no output is produced > at the command prompt, nor any files are created. > > In previous attempts, I used to also get this error > > /" .ERROR: QdecProject::VerifySubjects: Couldn't find subject '032' in > SUBJECTS_DIR "/ > /Syntax error: Bad fd number"/ > > after following the sh/bash workaround from this > <https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2008-October/008618.html>previous > > thread, I no longer get that error, however get stuck with the error > mentioned above. > > My SUBJECTS_DIR already contains a copy of the default subjects folder. > > Debug info below. Any help greatly appreciated! > Tudor > > -------- freesurfer-Linux-centos4-stable-pub-v5.1.0 -------- > Setting up environment for FreeSurfer/FS-FAST (and FSL) > FREESURFER_HOME /home/virtualuser/freesurfer > FSFAST_HOME /home/virtualuser/freesurfer/fsfast > FSF_OUTPUT_FORMAT nii.gz > SUBJECTS_DIR /media/Dell/_FS/buckner_data/subjects > MNI_DIR /home/virtualuser/freesurfer/mni > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
