If you have the T1 for colin27, then just run recon-all on it. doug
On 03/29/2013 01:48 AM, ZhiLiangLong wrote: > Hi FS experts: > I am trying to map AAL template onto FS surface to create > surface-based AAL template. Several days ago, i asked this question, > and Garikoitz Lerma gave me some suggestions. Possibly, i think the > process is like as folllows: > 1. downloa the Colin27 subject in Surfrend page, and transform it > to the latest FS version (5.2 currently). > 2. obtain register.dat between Colin27 subject and > single_subj_T1.nii under the /canonical/ directory in SPM8 using > bbregister. > bbregister --s Colin27_subject --mov single_subj_T1.nii --reg > register.dat --init-fsl --t1 > 3. transfrom each AAL ROI to the surface file with register.dat file > obtained above using mri_vol2surf. > mri_vol2surf --mov AAL_ROI.nii --reg register.dat --projdist-max > 0 1 0.1 --interp nearest --hemi lh \ > --out lh.Colin27_AALROI.mgh --reshape > 4. use mri_label2label or mri_segstat to obtain the cortical thickness > of each ROI for individual subject. > My question is about the first step. How to transform the Colin27 > subject to FS version 5.2? that is to say how can i get the FS > version of Colin27 template instead of fsaverage template? > Hope so meone gives me some suggetions. > Besh wishes. > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
