No problem, you can usually find the answers to most of these types of questions in the help text of the commands. For example if you run "mris_label2annot --help" you'll see:
[...] --a annotname Name of the annotation to create. The actual file will be called hemi.annotname.annot, and it will be created in subject/label. If this file exists, then mris_label2annot exits immediately with an error message. It is then up to the user to manually delete this file (this is so annotations are not accidentally deleted, which could be a huge inconvenience). [...] On Tue, 26 Mar 2013, _andre...@sapo.pt wrote: > Oh so that was it... I've cd to the dir where the annot file is and now > everything worked just fine... I checked the values in the stats file > and they are smaller now. > > So I must do that when running the label2label so the files are created > in the label dir and not in Freesurfer dir... > > By the way, why did the command label2annot created the file in the > right dir? > > > As you're noticing I'm not very familiar with Unix and while using> > Freesurfer I never had to use the cd command to work... > > Thank you very much Anastasia! _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
