He's on a Mac, so the command would be:
otool -L kvlApplyTransform
and the output will be:
kvlApplyTransform:
libITKCommon.3.16.dylib (compatibility version 3.16.0, current version
3.16.0)
libITKIO.3.16.dylib (compatibility version 3.16.0, current version
3.16.0)
libITKznz.3.16.dylib (compatibility version 3.16.0, current version
3.16.0)
/usr/lib/libz.1.dylib (compatibility version 1.0.0, current version
1.2.5)
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current
version 159.1.0)
/usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current
version 52.0.0)
which is a little odd.
Stefano, I will get back to you while I debug the issue.
-Zeke
On 03/22/2013 02:39 PM, std...@virgilio.it wrote:
> From command line I obtain:
>
> Stefano% ldd kvlApplyTransform
> ldd: Command not found.
>
> I do not know is useful, but I have done this analysis with the previous
> version with any problem.
>
>
> Stefano
>
>
> ----Messaggio originale----
> Da: igles...@nmr.mgh.harvard.edu
> Data: 22-mar-2013 19.19
> A: <std...@virgilio.it>
> Cc: <k...@nmr.mgh.harvard.edu>, <freesurfer@nmr.mgh.harvard.edu>
> Ogg: Re: [Freesurfer] R: Re: hippo subfield
>
> Hi Stefano,
> >From the command line, type:
> ldd kvlApplyTransform
> and send us the output that you get.
> Cheers,
> /Eugenio
>
>
> On Fri, 2013-03-22 at 18:44 +0100, std...@virgilio.it wrote:
> > I'm sorry but, what's meaning "ldd kvlApplyTransform"? What's I should
> > do more simply?
> >
> >
> > Stefano
> >
> >
> >
> >
> >
> > ----Messaggio originale----
> > Da: k...@nmr.mgh.harvard.edu
> > Data: 22-mar-2013 18.22
> > A: <std...@virgilio.it>
> > Cc: <freesurfer@nmr.mgh.harvard.edu>
> > Ogg: Re: [Freesurfer] hippo subfield
> >
> > Hi Stefano,
> >
> > Can you do "ldd kvlApplyTransform" and send us the result?
> >
> > Koen
> >
> > On 3/22/13, std...@virgilio.it <std...@virgilio.it Hippocampal
> > Subfields
> > > processing Fri Mar 22 16:56:31 CET 2013\n mkdir -p
> > >
> /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults\n
> > > kvlSegmentHippocampalSubfields.sh Diff02 left
> > > /Applications/freesurfer/subjects/subject_prova/Diff02
> > >
> /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults
> > > \nDoing left sidemeshFileName:
> > >
> /Applications/freesurfer/data/GEMS/CurrentMeshCollection30.gzcompressionLookupTableFileName:
> > >
> /Applications/freesurfer/data/GEMS/compressionLookupTable_left.txtboundingBoxFileName:
> > > /Applications/freesurfer/data/GEMS/imageDump.mgzsubjectName:
> > Diff02side:
> > > leftinputDirectory:
> > > /Applications/freesurfer/subjects/subject_prova/Diff02outputDirectory:
> > >
> /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResultsdirectory
> > >
> /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults/Diff02
> > > already existsdirectory
> > >
> /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults/Diff02/left
> > > already existscd
> > >
> /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults/Diff02/leftcp
> > >
> > -f
> /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/mri/nu.mgz
> > > .cp -f
> > >
> /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/mri/aseg.mgz
> > > .cp -f
> > >
> /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/mri/transforms/talairach.xfm
> > > .cp /Applications/freesurfer/data/GEMS/imageDump.mgz .kvlApplyTransform
> > > imageDump.mgz -0.9991 -0.0328 0.0258 144.0010 -0.0330 0.9994 -0.0086
> > 2.6560
> > > 0.0255 0.0094 0.9996 -3.1939dyld: Library not loaded:
> > > libITKCommon.3.16.dylib Referenced from:
> > > /Applications/freesurfer/bin/kvlApplyTransform Reason: image not
> > > found/Applications/freesurfer/bin/kvlSegmentHippocampalSubfields.sh:
> > line
> > > 18: 77530 Trace/BPT trap: 5 kvlApplyTransform imageDump.mgz
> > -0.9991
> > > -0.0328 0.0258 144.0010 -0.0330 0.9994 -0.0086 2.6560 0.0255 0.0094
> > 0.9996
> > > -3.1939failed to do kvlApplyTransform imageDump.mgz
> > > -0.9991 -0.0328 0.0258 144.0010
> > > -0.0330 0.9994 -0.0086 2.6560
> > 0.0255
> > > 0.0094 0.9996 -3.1939Darwin iMac-di-Stefano.local 12.3.0
> > Darwin
> > > Kernel Version 12.3.0: Sun Jan 6 22:37:10 PST 2013;
> > > root:xnu-2050.22.13~1/RELEASE_X86_64 x86_64
> > > recon-all -s Diff02 exited with ERRORS at Fri Mar 22 16:56:31 CET
> > 2013
> > > For more details, see the log file
> > >
> /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/scripts/recon-all.logTo
> > > report a problem, see
> > http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> > _______________________________________________
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> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> >
> > The information in this e-mail is intended only for the person to whom
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>
> --
> -------------------------------------------------------------------------------------
> Juan Eugenio Iglesias, PhD
> http://www.jeiglesias.com
> igles...@nmr.mgh.harvard.edu
> Athinoula A. Martinos Center for Biomedical Imaging
> Department of Radiology, MGH, Harvard Medical School
> 149 Thirteenth Street, Suite 2301
> Charlestown, Massachusetts 2129
> U.S.A.
>
>
>
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