>From command line I obtain: Stefano% ldd kvlApplyTransformldd: Command not found. I do not know is useful, but I have done this analysis with the previous version with any problem.
Stefano ----Messaggio originale---- Da: igles...@nmr.mgh.harvard.edu Data: 22-mar-2013 19.19 A: <std...@virgilio.it> Cc: <k...@nmr.mgh.harvard.edu>, <freesurfer@nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] R: Re: hippo subfield Hi Stefano, >From the command line, type: ldd kvlApplyTransform and send us the output that you get. Cheers, /Eugenio On Fri, 2013-03-22 at 18:44 +0100, std...@virgilio.it wrote: > I'm sorry but, what's meaning "ldd kvlApplyTransform"? What's I should > do more simply? > > > Stefano > > > > > > ----Messaggio originale---- > Da: k...@nmr.mgh.harvard.edu > Data: 22-mar-2013 18.22 > A: <std...@virgilio.it> > Cc: <freesurfer@nmr.mgh.harvard.edu> > Ogg: Re: [Freesurfer] hippo subfield > > Hi Stefano, > > Can you do "ldd kvlApplyTransform" and send us the result? > > Koen > > On 3/22/13, std...@virgilio.it <std...@virgilio.it Hippocampal > Subfields > > processing Fri Mar 22 16:56:31 CET 2013\n mkdir -p > > /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults\n > > kvlSegmentHippocampalSubfields.sh Diff02 left > > /Applications/freesurfer/subjects/subject_prova/Diff02 > > /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults > > \nDoing left sidemeshFileName: > > /Applications/freesurfer/data/GEMS/CurrentMeshCollection30.gzcompressionLookupTableFileName: > > /Applications/freesurfer/data/GEMS/compressionLookupTable_left.txtboundingBoxFileName: > > /Applications/freesurfer/data/GEMS/imageDump.mgzsubjectName: > Diff02side: > > leftinputDirectory: > > /Applications/freesurfer/subjects/subject_prova/Diff02outputDirectory: > > /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResultsdirectory > > /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults/Diff02 > > already existsdirectory > > /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults/Diff02/left > > already existscd > > /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/tmp/subfieldResults/Diff02/leftcp > > > -f /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/mri/nu.mgz > > .cp -f > > /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/mri/aseg.mgz > > .cp -f > > /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/mri/transforms/talairach.xfm > > .cp /Applications/freesurfer/data/GEMS/imageDump.mgz .kvlApplyTransform > > imageDump.mgz -0.9991 -0.0328 0.0258 144.0010 -0.0330 0.9994 -0.0086 > 2.6560 > > 0.0255 0.0094 0.9996 -3.1939dyld: Library not loaded: > > libITKCommon.3.16.dylib Referenced from: > > /Applications/freesurfer/bin/kvlApplyTransform Reason: image not > > found/Applications/freesurfer/bin/kvlSegmentHippocampalSubfields.sh: > line > > 18: 77530 Trace/BPT trap: 5 kvlApplyTransform imageDump.mgz > -0.9991 > > -0.0328 0.0258 144.0010 -0.0330 0.9994 -0.0086 2.6560 0.0255 0.0094 > 0.9996 > > -3.1939failed to do kvlApplyTransform imageDump.mgz > > -0.9991 -0.0328 0.0258 144.0010 > > -0.0330 0.9994 -0.0086 2.6560 > 0.0255 > > 0.0094 0.9996 -3.1939Darwin iMac-di-Stefano.local 12.3.0 > Darwin > > Kernel Version 12.3.0: Sun Jan 6 22:37:10 PST 2013; > > root:xnu-2050.22.13~1/RELEASE_X86_64 x86_64 > > recon-all -s Diff02 exited with ERRORS at Fri Mar 22 16:56:31 CET > 2013 > > For more details, see the log file > > /Applications/freesurfer/subjects/subject_prova/Diff02/Diff02/scripts/recon-all.logTo > > report a problem, see > http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- ------------------------------------------------------------------------------------- Juan Eugenio Iglesias, PhD http://www.jeiglesias.com igles...@nmr.mgh.harvard.edu Athinoula A. Martinos Center for Biomedical Imaging Department of Radiology, MGH, Harvard Medical School 149 Thirteenth Street, Suite 2301 Charlestown, Massachusetts 2129 U.S.A.
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