Hi Dan that sounds worrisome. I don't think we've seen this problem in our test cases. Can you upload an example so we can take a look?
thanks Bruce On Fri, 22 Mar 2013, Daniel Carey wrote: > Dear All, > > We have been running the recon-all pipeline in 5.2 and have been encountering > some difficulties with segmentations. We have isolated these issues to > problems with Talairach registrations, and have been re-running recon-all > with the Talairach registrations manually corrected in tkregister2; however, > doing so appears to worsen our segmentation problems. In particular, the orig > surface appears substantially shrunk away from the filled and white matter > volumes. > > Has anyone encountered such difficulties with manually corrected Talairach > registrations placed in the processing stream, or indeed, seen the surface > shrink to such an extent? We initially provided recon-all with synthesised > volumes obtained using MRI-synthesise from the developer version (our raw > scans are high-resolution PDw and T1w volumes). > > Any insights would be greatly appreciated. > > Many thanks, > > Dan > > --- > Daniel Carey, M.Sc., > Marie Curie PhD Fellow, > Centre for Brain and Cognitive Development, > Birkbeck College, > 32 Torrington Sq., > London, > WC1E 7JL > UK > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
