Hi Bruces, It's because i'm doing a comparison between brainsuite and freesrufer. So , I would like to export results of segmentation with Brainsuite and make measurements with FreeSurfer. In Fact, with freesurfer I can have more parameters than with freesurfer. Does it exist another way for get measurements with surfaces ( not generated by Freesurfer)? Thx . VP Date: Wed, 20 Mar 2013 08:38:26 -0400 From: fis...@nmr.mgh.harvard.edu To: pval...@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Brainsuite --> FreeSurfer
Hi Valtina you can try opening it with freeview if all you want is visualization. If you are trying to produce anatomical stats you will need a lot more than just the pial surface, as mris_anatomical_stats computes many things from an array of inputs (such as the wm.mgz, the aseg.mgz, etc....). Why not just run recon-all and generate them? Bruce On Tue, 19 Mar 2013, Valtina Pouegue wrote: > I could see the created surface in MAtlab ( 'read_surf,) but I could't open > the file in Freesurfer with tksurfer.... > > VP > > _________________________________________________________________________________________________________________________ > From: pval...@hotmail.com > To: freesurfer@nmr.mgh.harvard.edu > Subject: Brainsuite --> FreeSurfer > Date: Tue, 19 Mar 2013 22:34:39 -0400 > > Hi, > > I've done a segmentation with Brainsuite ( and FreeSurfer) and I would like > to get measurements with FreeSurfer. SO, I > convert my rile ( readdfs --> write_surf ) from BRainsuite in Matlab to be > usable with Freesurfer. Then, I tried to get > measurements with the command .'mris_anatomical_stats' . with the file > created previously in Matlab (I called it > 'rh.pial'). But I got this error like the system is not able to read wm.mgz. > That's why I thought I could juste replace th 'rh.pial' of the segmentation > with Freesurfey by the 'rh.pial' created with > Matalb and then run mris_anatomical_Stats. IS this a good approximation. > Could you recommand another way. > > > VP > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
