Hi Valtina
you can try opening it with freeview if all you want is visualization. If
you are trying to produce anatomical stats you will need a lot more than
just the pial surface, as mris_anatomical_stats computes many things from
an array of inputs (such as the wm.mgz, the aseg.mgz, etc....). Why not
just run recon-all and generate them?
Bruce
On Tue, 19 Mar 2013, Valtina Pouegue wrote:
I could see the created surface in MAtlab ( 'read_surf,) but I could't open
the file in Freesurfer with tksurfer....
VP
_________________________________________________________________________________________________________________________
From: pval...@hotmail.com
To: freesurfer@nmr.mgh.harvard.edu
Subject: Brainsuite --> FreeSurfer
Date: Tue, 19 Mar 2013 22:34:39 -0400
Hi,
I've done a segmentation with Brainsuite ( and FreeSurfer) and I would like to
get measurements with FreeSurfer. SO, I
convert my rile ( readdfs --> write_surf ) from BRainsuite in Matlab to be
usable with Freesurfer. Then, I tried to get
measurements with the command .'mris_anatomical_stats' . with the file created
previously in Matlab (I called it
'rh.pial'). But I got this error like the system is not able to read wm.mgz.
That's why I thought I could juste replace th 'rh.pial' of the segmentation
with Freesurfey by the 'rh.pial' created with
Matalb and then run mris_anatomical_Stats. IS this a good approximation. Could
you recommand another way.
VP
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
