see: http://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferWiki?action=AttachFile&do=get&target=FreeSurfer_Suggested_Morphometry_Protocols.pdf
> Hi Gari > > we use a bandwidth and readout matched (to our multi-echo mprage) T2-SPACE > with a FLAIR inversion pulse. Andre (ccd) can give you the details > > cheers > Bruce > > > On Thu, 7 Mar 2013, Garikoitz Lerma-Usabiaga wrote: > >> Hi Bruce,is there any recommended protocol for T2 acquisition to be used >> in the 5.2 recon-all stream? >> >> Should we used the same voxel size as the T1? (we are using 1 mm3 right >> now). >> >> If it is going to improve the skull striping and pial surface creation, >> we might acquire specific T2 images just to be >> used in the recon-all stream. >> >> many thanks, >> Gari >> >> >> On Wed, Feb 27, 2013 at 2:44 PM, Bruce Fischl >> <fis...@nmr.mgh.harvard.edu> wrote: >> Hi Nicola >> >> the T2 might in 5.2, but it is pretty thick slices so might hurt >> more >> than it helps. Not sure, but you can try it out >> >> cheers >> Bruce >> On Wed, 27 Feb 2013, Nicola >> Toschi wrote: >> >> > Hello List, >> > >> > on out 3T scanner, in addition to MPRAGE images (1 mm^3), we >> usually >> > acquire T2 and PD images - however they are at 1x1x5 mm >> resolution. >> > >> > Would you recommend passing these (T2+PD) to the recon-all >> stream anyway >> > - would they add value/accuracy to the segmentation/parcellation >> (or >> > would they possibly decrease accuracy)? >> > >> > Thanks in advance, >> > >> > Nicola >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > >> > >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the >> sender and properly >> dispose of the e-mail. >> >> >> >>_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
