Josh, The new -3T flag affects the nu correction stage, and specifies a 3T-based target for the talairach alignment, and the existing -mprage flag affects mri_normalize and mri_segment, so you can use both.
Nick > The new Freesurfer has an optional flag to adjust NU intensity correction > parameters for images acquired on 3T scanners. There exists also a flag > for MPRage sequences. > > I use 3T MPRages. What is the recommended use in this case? > > Thanks > Josh > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
