Using mri_label2vol will work a little better than mri_vol2vol.
doug
On 3/5/13 8:41 PM, Bruce Fischl wrote:
you'll have to look at the help. It's pretty extensive since Doug
wrote it :) Then you can use freeview to visualize the transformed
intensity and aseg volumes
cheers
Bruce
On Tue, 5 Mar 2013, Natalie Han wrote:
Thanks for the quick reply. Can you elaborate a little bit how to use
mri_vol2vol to get what I want? what would be the final scipt for
tkmedit
then?
On Tue, Mar 5, 2013 at 5:31 PM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu>
wrote:
Hi Natalie
sorry, tkmedit won't do what you want. It's old and we are not
developing it anymore. You can apply the transform using
mri_vol2vol, just make sure to use nearest nbr interp for the
aseg.
cheers
Bruce
On Tue, 5 Mar 2013, Natalie Han wrote:
Hi, all,
I have a tkmedit display issue when I try to add
transformation to the main
volume, but the segmentation volume won't conform to
Talairach domain
accordingly. Here is the commandline
tkmedit subject norm.mgz -main-transform
talairach.xfm -seg aseg.mgz
really appreciate any feedback on how to add
transformation on this
segmentation results.
Thanks.
Natalie
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