freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0
On Feb 28, 2013, at 12:12 PM, Rudolph Pienaar wrote: > It looks like you might be running a too-old version of > mri_annotation2label. What FS build/version are you running? > > > On Thu Feb 28 11:36:50 2013, Sudhin A. Shah wrote: >> Hi I got an error -lobesStrict unknown. I am running mri_annotation2label >> version stable5. >> >> Is there a workaround? >> >> On Feb 28, 2013, at 10:47 AM, Rudolph Pienaar wrote: >> >>> After a conventional FS run you can do the following: >>> >>> $>mri_annotation2label --subject <subj> --hemi <hemi> --lobesStrict >>> <hemi>.lobesStrict.annot >>> >>> Which will create an annotation file <hemi>.lobesStrict.annot containing >>> the lobar labels. To extract these into their own individual label files, do >>> >>> $>mri_annotation2label --subject <subj> --hemi <hemi> --annotation >>> lobesStrict --outdir <subj>/label >>> >>> This will populate the <subj>/label directory with files: >>> >>> <hemi>.frontal.label >>> <hemi>.parietal.label >>> <hemi>.temporal.label >>> <hemi>.occiptal.label >>> <hemi>.cingulate.label >>> >>> So, to be pendantic, if you want the lobar labels for the left hemisphere >>> of a subject called 'sub1', you would >>> >>> $>mri_annotation2label --subject sub1 --hemi lh --lobesStrict >>> lh.lobesStrict.annot >>> $>mri_annotation2label --subject sub1 --hemi lh --annotation lobesStrict >>> --outdir sub1/label >>> >>> HTH >>> -=R >>> >>> >>> On Thu Feb 28 09:24:58 2013, Sudhin A. Shah wrote: >>>> Hello, >>>> >>>> Is there a lookup table I can use to convert free surfer labels to lobes? >>>> Either label nos (1006, 2006 etc) or label names (ctx-rh-superiorfrontal)? >>>> I have 86 labels and want an easy way to differentiate them into the >>>> corresponding lobes. >>>> >>>> Thanks, >>>> S >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>> >>> >>> >>> -- >>> Rudolph Pienaar, M.Eng, D.Eng / email: rudo...@nmr.mgh.harvard.edu >>> MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging >>> 149 (2301) 13th Street, Charlestown, MA 02129 USA >>> >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >> >> > > > > -- > Rudolph Pienaar, M.Eng, D.Eng / email: rudo...@nmr.mgh.harvard.edu > MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging > 149 (2301) 13th Street, Charlestown, MA 02129 USA > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
