After a conventional FS run you can do the following: $>mri_annotation2label --subject <subj> --hemi <hemi> --lobesStrict <hemi>.lobesStrict.annot
Which will create an annotation file <hemi>.lobesStrict.annot containing the lobar labels. To extract these into their own individual label files, do $>mri_annotation2label --subject <subj> --hemi <hemi> --annotation lobesStrict --outdir <subj>/label This will populate the <subj>/label directory with files: <hemi>.frontal.label <hemi>.parietal.label <hemi>.temporal.label <hemi>.occiptal.label <hemi>.cingulate.label So, to be pendantic, if you want the lobar labels for the left hemisphere of a subject called 'sub1', you would $>mri_annotation2label --subject sub1 --hemi lh --lobesStrict lh.lobesStrict.annot $>mri_annotation2label --subject sub1 --hemi lh --annotation lobesStrict --outdir sub1/label HTH -=R On Thu Feb 28 09:24:58 2013, Sudhin A. Shah wrote: > Hello, > > Is there a lookup table I can use to convert free surfer labels to lobes? > Either label nos (1006, 2006 etc) or label names (ctx-rh-superiorfrontal)? I > have 86 labels and want an easy way to differentiate them into the > corresponding lobes. > > Thanks, > S > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Rudolph Pienaar, M.Eng, D.Eng / email: rudo...@nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street, Charlestown, MA 02129 USA _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
