Tudor, Greg, and Petr, I'm currently attempting to replicate this problem. In the meantime, can you tell me which Windows and which VirtualBox version you are running this on? I'm at a loss as to why this build no longer works.
Nick On Mon, 2013-01-28 at 18:19 +0000, Tudor Popescu wrote: > Dear Nick, > > I was wondering whether you (or indeed anyone else reading this!) know > where the error that I report earlier in this thread might be coming > from. Many thanks in advance! > > Tudor > > On 20 December 2012 05:27, Douglas Greve <gr...@nmr.mgh.harvard.edu> > wrote: > Hi Tudor, I don't know how to solve this problem. Maybe Nick > knows. > doug > > > On 12/19/12 6:59 AM, Tudor Popescu wrote: > > > Hi Doug, thanks for replying, here is the file attached. In > > case the attachment doesn't go through please let me know > > if I should send it to a different address. > > Tudor > > > > On 18 December 2012 17:34, Douglas N Greve > > <gr...@nmr.mgh.harvard.edu> wrote: > > > > Can you send the recon-all.log file (located in the > > subject/scripts folder). > > doug > > > > > > On 12/18/2012 11:41 AM, Tudor Popescu wrote: > > > Hello, > > > > > > First of all, apologies for asking for help three > > times today! THings > > > will hopefully become clearer once I get used to > > FS a bit; I really do > > > appreciate the amazing support provided by the > > team behind FreeSurfer! > > > > > > I ran the following command on one of my > > structurals: > > > > > > > > /recon-all -subject M01 -i M01.nii.gz -all/ > > > > > > After a few minutes, recon-all ended with the > > following message: > > > > > > > > /Assertion failed at line 827 in file > > templates/CachedArray.cc/ > > > /nu_estimate_np_and_em: crashed while running > > volume_stats > > > (termination status=256)/ > > > /nu_correct: crashed while running > > nu_estimate_np_and_em (termination > > > status=256)/ > > > /ERROR: nu_correct/ > > > /Linux FreeSurfer 2.6.28-11-generic #42-Ubuntu SMP > > Fri Apr 17 01:57:59 > > > UTC 2009 i686 GNU/Linux/ > > > > > > I apologise for reporting an error that's already > > been reported in the > > > past, but unfortunately the solutions suggested in > > those past threads > > > did not work in my case. To address a few of them: > > > > > > > > * my PATH (listed below) does not seem to > > include two MNI installations > > > > > > //home/virtualuser/freesurfer/bin:/home/virtualuser/freesurfer/fsfast/bin:/home/virtualuser/freesurfer/tktools:/home/virtualuser/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games/ > > > * the version of FreeSurfer that I installed is > > the latest disk > > > image available on the website > > > > > (freesurfer-Virtualbox-linux-x86-stable-pub-v5.1.0-full) - > I did > > > not see any dev version that would presumably > > include any missing > > > libraries presumably implied by the above > > error > > > * I tried updating the Xubuntu inside my > > VirtualBox, however it > > > reports an insufficient space problem that > > from I can see does not > > > have a trivial fix > > > > > > Advance thanks for any help! > > > Tudor > > > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu > > Phone Number: 617-724-2358 > > Fax: 617-726-7422 > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > FileDrop: > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > Outgoing: > > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for > > the person to whom it is > > addressed. If you believe this e-mail was sent to > > you in error and the e-mail > > contains patient information, please contact the > > Partners Compliance HelpLine at > > http://www.partners.org/complianceline . If the > > e-mail was sent to you in error > > but does not contain patient information, please > > contact the sender and properly > > dispose of the e-mail. > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
