or try deleting the T1.mgz and running recon-all -make all cheers Bruce
On Sat, 12 Jan 2013, Louis Nicholas Vinke wrote: > Hi Sandra, > Have you taken a look at the T1.mgz volume to see if there is anything > peculiar? > -Louis > > On Wed, 9 Jan 2013, Sandra Preissler wrote: > >> Hi Bruce, >> >> Thanks for your fast reply. >> I checked it again and there is 131 GB disk space free on the device. >> >> Best regards >> Sandra >> >> Zitat von Bruce Fischl <fis...@nmr.mgh.harvard.edu>: >> >>> Hi Sandra >>> >>> can you check to make sure that you have enough disk space and that >>> that partition isn't full? >>> >>> cheers >>> Bruce >>> On Wed, 9 Jan 2013, Sandra Preissler wrote: >>> >>>> Dear freesurfer users, >>>> >>>> I have an unexpected error using autorecon1. >>>> The error occurred during the skull stripping process of a person >>>> called ?PTpost_P04?. >>>> >>>> First I tried: recon-all ?autorecon1 ?s PTpost_P04 >>>> After the first error (recon-all -s PTpost_P04 exited with ERRORS) >>>> I checked the logfile and tried the following: >>>> cd >>>> /mnt/bp13dat/Studie43_Phantom_Arm/Statistik/4_MRT/freesurfer/PTpost_P04/mri >>>> >>>> followed directly by: >>>> mri_watershed -keep brainmask.auto.mgz brainmask.mgz brainmask.mgz >>>> -T1 -brain_atlas >>>> /opt/freesurfer/average/RB_all_withskull_2008-03-26.gca >>>> transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz >>>> >>>> I became the error message: >>>> ?could not read 65536 bytes at slice 76? >>>> >>>> The information about the freesurfer version and linux version used are: >>>> FREESURFER_HOME: /opt/freesurfer >>>> Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 >>>> Kernel info: Linux 2.6.34.10-0.6-default x86_64 >>>> >>>> It would be great if anybody could help me in solving this. >>>> >>>> Best regards >>>> Sandra >>>> >>>> >>>> ---------------------------------------------------------------- >>>> This message was sent through https://webmail.uni-jena.de >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to >>> you in error >>> but does not contain patient information, please contact the sender >>> and properly >>> dispose of the e-mail. >>> >>> >> >> >> >> ---------------------------------------------------------------- >> This message was sent through https://webmail.uni-jena.de >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
