Hi Sandra can you check to make sure that you have enough disk space and that that partition isn't full?
cheers Bruce On Wed, 9 Jan 2013, Sandra Preissler wrote: > Dear freesurfer users, > > I have an unexpected error using autorecon1. > The error occurred during the skull stripping process of a person called > ?PTpost_P04?. > > First I tried: recon-all ?autorecon1 ?s PTpost_P04 > After the first error (recon-all -s PTpost_P04 exited with ERRORS) I checked > the logfile and tried the following: > cd > /mnt/bp13dat/Studie43_Phantom_Arm/Statistik/4_MRT/freesurfer/PTpost_P04/mri > > followed directly by: > mri_watershed -keep brainmask.auto.mgz brainmask.mgz brainmask.mgz -T1 > -brain_atlas /opt/freesurfer/average/RB_all_withskull_2008-03-26.gca > transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz > > I became the error message: > ?could not read 65536 bytes at slice 76? > > The information about the freesurfer version and linux version used are: > FREESURFER_HOME: /opt/freesurfer > Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 > Kernel info: Linux 2.6.34.10-0.6-default x86_64 > > It would be great if anybody could help me in solving this. > > Best regards > Sandra > > > ---------------------------------------------------------------- > This message was sent through https://webmail.uni-jena.de _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
