Thank Nick, when I try mris_calc, I get the following error: /Users/Lado 1> mris_calc /usr/local/freesurfer/bin/mris_calc: Exec format error. Binary file not executable.
I applied chmod/chown/chgrp to the executable files to resemble the other freesurfer executables, the prior mris_calc file was renamed to mris_calc.old, shown below for comparison: /Users/Lado 10> ls -l /usr/local/freesurfer/bin/mris_calc* -rwxr-xr-x 1 root wheel 5936512 Aug 13 19:53 /usr/local/freesurfer/bin/mris_calc -rwxr-xr-x 1 root wheel 5903448 May 26 2011 /usr/local/freesurfer/bin/mris_calc.old Not sure what I'm missing, any suggestions? -Fred Fred Lado, MD PhD Director, Neurology Service - Moses & North Divisions Director, EEG Laboratory Associate Clinical Professor of Neurology Montefiore Medical Center 718-920-8499 office 718-324-3730 fax email: ladof...@gmail.com On Jan 2, 2013, at 4:04 PM, Nick Schmansky <ni...@nmr.mgh.harvard.edu> wrote: > Fred, > > You can try an updated mris_calc for the mac found here: > > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/macos-leopard-intel/ > > Nick > > > On Mon, 2012-12-31 at 13:21 +0200, Rudolph Pienaar wrote: >> Hi Fred -- >> >> I'm currently traveling and have limited internet connectivity. I'll be back >> at the office later in the week and will take a look then. >> >> In the meantime, has this ever worked for you previously? I know that older >> versions of 'mris_calc' were somewhat particular about filename lengths and >> filename conventions, and you might be seeing the same bug here... >> >> Best >> -=R >> >> Sent from my iPad >> >> On Dec 28, 2012, at 7:50, Fred Lado <ladof...@gmail.com> wrote: >> >>> Hi FreeSurfer Gurus, >>> I am having difficulty invoking the 'upl' and 'lrl' operations in >>> mris_calc. The following is the message I get for 'upl': >>> >>> /usr/local/freesurfer/bin/fscalc rh.dat.mgh upl 20 --o tmp.mgh >>> >>> freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 >>> Darwin Fred-Lados-MacBook-Pro.local 12.2.0 Darwin Kernel Version 12.2.0: >>> Sat Aug 25 00:48:52 PDT 2012; root:xnu-2050.18.24~1/RELEASE_X86_64 x86_64 >>> mri_convert rh.dat.mgh ./tmpdir.fscalc.5004/tmp.mgh >>> mri_convert rh.dat.mgh ./tmpdir.fscalc.5004/tmp.mgh >>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ >>> reading from rh.dat.mgh... >>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 >>> i_ras = (-1, -0, 0) >>> j_ras = (-0, -1, 0) >>> k_ras = (-0, -0, -1) >>> writing to ./tmpdir.fscalc.5004/tmp.mgh... >>> ---------------------- >>> mris_calc -o ./tmpdir.fscalc.5004/tmp.mgh ./tmpdir.fscalc.5004/tmp.mgh upl >>> 20 >>> Unknown operation upl failed. >>> >>> No such file or directory >>> >>> Fred Lado, MD PhD >>> Director, Neurology Service - Moses & North Divisions >>> Director, EEG Laboratory >>> Associate Clinical Professor of Neurology >>> Montefiore Medical Center >>> 718-920-8499 office >>> 718-324-3730 fax >>> email: ladof...@gmail.com >>> >>> >>> >>> >>> >>> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
