Fred, You can try an updated mris_calc for the mac found here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/macos-leopard-intel/ Nick On Mon, 2012-12-31 at 13:21 +0200, Rudolph Pienaar wrote: > Hi Fred -- > > I'm currently traveling and have limited internet connectivity. I'll be back > at the office later in the week and will take a look then. > > In the meantime, has this ever worked for you previously? I know that older > versions of 'mris_calc' were somewhat particular about filename lengths and > filename conventions, and you might be seeing the same bug here... > > Best > -=R > > Sent from my iPad > > On Dec 28, 2012, at 7:50, Fred Lado <ladof...@gmail.com> wrote: > > > Hi FreeSurfer Gurus, > > I am having difficulty invoking the 'upl' and 'lrl' operations in > > mris_calc. The following is the message I get for 'upl': > > > > /usr/local/freesurfer/bin/fscalc rh.dat.mgh upl 20 --o tmp.mgh > > > > freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 > > Darwin Fred-Lados-MacBook-Pro.local 12.2.0 Darwin Kernel Version 12.2.0: > > Sat Aug 25 00:48:52 PDT 2012; root:xnu-2050.18.24~1/RELEASE_X86_64 x86_64 > > mri_convert rh.dat.mgh ./tmpdir.fscalc.5004/tmp.mgh > > mri_convert rh.dat.mgh ./tmpdir.fscalc.5004/tmp.mgh > > $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ > > reading from rh.dat.mgh... > > TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 > > i_ras = (-1, -0, 0) > > j_ras = (-0, -1, 0) > > k_ras = (-0, -0, -1) > > writing to ./tmpdir.fscalc.5004/tmp.mgh... > > ---------------------- > > mris_calc -o ./tmpdir.fscalc.5004/tmp.mgh ./tmpdir.fscalc.5004/tmp.mgh upl > > 20 > > Unknown operation upl failed. > > > > No such file or directory > > > > Fred Lado, MD PhD > > Director, Neurology Service - Moses & North Divisions > > Director, EEG Laboratory > > Associate Clinical Professor of Neurology > > Montefiore Medical Center > > 718-920-8499 office > > 718-324-3730 fax > > email: ladof...@gmail.com > > > > > > > > > > > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
