Hi Catherine, Using the -autorecon-cp will take care of both cp and wm edits. Be sure to run -autorecon3 afterwards if you are satisfied with the edits you made. -Louis
On Mon, 10 Dec 2012, Catherine Bois wrote: > Hi, > > when reconstructing the brains including manual edits, does the step that > incorporates control points "come before" the white > matter edits? Ie so if I do both control points and white matter edits, will > the white matter edits be take into account even if > I just use -autorecon -cp , and not -wm? > > Thanks > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
