Hi Bruce, I have 8 GB ram and have assigned 6GB of it to FreeSurfer. Shall I increase it to 8? Would that be enough or still too low?
Thank you, Negar On Fri, Nov 30, 2012 at 7:31 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > Look like it is running out of memory. How much ram do you have on that > machine? > Bruce > > > > On Nov 30, 2012, at 9:29 PM, Negar Memarian <negar.memar...@utoronto.ca> > wrote: > > > Hello, > > > > I ran recon-all -all on my subject. The process ended after several > minutes with this message at the end: > > recon-all -s 350_FS exited with ERRORS at Fri Nov 30 17:57:59 PST 2012 > > > > I tried loading the pial and white surfaces for editing using this > command: > > tkmedit 350_FS brainmask.mgz rh.white -aux-surface lh.white > > > > but looks like these surfaces do not exist (since the recon-all exited > prematurely). When I check the recon-all.log file I do not see any errors > except a few MCSRCH errors. So I cannot understand what exactly went wrong > in the recon-all. I've attached the recon-all log file. Can someone please > tell me what the problem is and how I can fix it? > > > > Many thanks, > > Negar > > p.s. I tried on more than one subject and I still face the same issue. > > > > > > Negar Memarian, MASc, PhD > > NSERC Postdoctoral Fellow > > Department of Neurology > > David Geffen School of Medicine at UCLA > > > > <recon-all.log> > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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