Dear Freesurfer experts, I have a general question regarding data analysis. Our group has collected data from patients with OA, some of them received treatment on their left leg, some of them on their right leg. We would like to flip the brain for the people that received treatment on their left leg to match the right leg group. Next, we would like perform group analysis on them. My question is, when should we flip the brain for the left leg group patients? Should we flip the raw images before we do any preprocessing at the individual level? Or should we flip the first level contrast images when we get some results for each of these subjects? I tried to flip the contrast images, but it seems to give me a lot of error at the second level group analysis level. It says that the flipped contrast image does not match the unflipped contrast image in orientation. Thank you very much.
Helen _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.