Do you have write permissions to the output dir? I noticed a perm error in the log. The recon-all.log file has the permission: -rw-rw-r-- 1 guest phd
doug On 11/06/2012 03:53 PM, Berg, S.F. van den wrote: > Hi Doug and Bruce > > There is enough disc space. A text file is attached, this file is created > with the "recon-all -s 0050 -qcache |& tee mylog.txt" command. I try the > "recon-all -s 0050 -qcache" command. The command start to run but finished > with errors. > > Have you got any idea of the problem in this case? Also the recon-all.log > file is attached (subject 0050). > > Thanks, > > Stan > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: 05 November 2012 19:37 > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] qcache error > > Do run out of disk space? Also, please send terminal output in a text > file rather than as a snapshot. You can do this with > > recon-all ... |& tee mylog.txt > > doug > > On 11/05/2012 10:21 AM, Berg, S.F. van den wrote: >> Dear Freesurfer experts, >> >> I have got a problem with the qcache function. I have already runned >> 150 subjects with the recon-all command. Before i can work with the >> statistical program qdec i have to smooth the subjects. I want to >> smooth them with the command: recon-all -s<subject> -qcache. The >> command start to run but finished with errors. A overview of the >> terminal output is attached to this email in JPEG format. What is the >> problem in this case? >> >> further information about freesurfer version: >> >> recon-all -version: Id: recon-all, v 1.373 2011/03/15 00:43:47 mreuter >> Exp $ >> >> We run FreeSurfer-Linux-centos5_x86_64-dev-201110315 under Debian >> Squeeze. >> >> Thanks a lot, >> >> Stan van den Berg >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
