Hi Doug, works great. Thanks a lot. Franz Am 26.10.2012 um 22:13 schrieb Douglas N Greve:
> Try this one > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_make_face_parcellation.mac > > doug > > On 10/26/2012 07:38 AM, Franz Liem wrote: >> Dear Doug, >> thanks for the quick response. Sorry that I missed the post. >> I downloaded the mac intel leopard dev from the nightly built and ran >> make_face_parcellation. >> Running it with ic5 produced 10236 unique values (instead of 10242), running >> it with ic3 641 (instead of 642) >> >> Is it possible that this is not the latest version? The BuildTimeStamp is: >> Jun 24 2012 06:10:12, you uploaded the >> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_make_face_parcellation.linux >> version on 16.07.12. >> >> ProgramName: mris_make_face_parcellation ProgramArguments: >> --all-info ProgramVersion: $Name: $ TimeStamp: 2012/10/26-11:34:24-GMT >> BuildTimeStamp: Jun 24 2012 06:10:12 CVS: $Id: >> mris_make_face_parcellation.c,v 1.18 2012/06/07 17:52:09 greve Exp $ ... >> Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC >> CompilerVersion: 40000 >> >> >> Thanks for your help, >> Franz >> >> >> Am 25.10.2012 um 18:29 schrieb Douglas N Greve: >> >>> Hi Franz, this was noted and addressed a few weeks ago. You can download >>> a new version here: >>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_make_face_parcellation.linux >>> doug >>> >>> On 10/25/2012 10:33 AM, Franz Liem wrote: >>>> Dear Freesurfers, >>>> >>>> I have performed make_face_parcellation on fsaverage (with ic5) >>>> (Darwin-leopard-i686-stable-pub-v5.1.0). I read_annotation ed the >>>> parcellation into matlab an noticed that while colortable.table has >>>> 10242 rows (as expected), length(unique(colortable.table(:,5))) >>>> produces 9834 => some entries are in the list more than once. If I >>>> grasped the procedure correctly, the entries in label are determined >>>> by colortable.table(:,5) and colortable.table(:,5) is determined by: >>>> % Column 5 is the structure ID, calculated from >>>> % R + G*2^8 + B*2^16 + flag*2^24 >>>> >>>> One example for this problem is colortable.table(43,:) >>>> and colortable.table(86,:) both read: >>>> 0 0 170 0 11141120 >>>> >>>> How are Rm G, B determined? >>>> I guess one quick fix would be to introduce flags>0. Would that >>>> affect anything else? Or, is there a way to force my own indices >>>> onto colortable.table(:,5)? (if I change this entry, save the annot >>>> and load the annot, the entry is atR + G*2^8 + B*2^16 + flag*2^24again >>>> >>>> (I already encountered the effects of this problem a couple of months >>>> ago (2. in this post >>>> http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg21189.html).) >>>> >>>> Thank you so much for your help, >>>> Franz >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
