Dear Doug,
thanks for the quick response. Sorry that I missed the post.
I downloaded the mac intel leopard dev from the nightly built and ran
make_face_parcellation.
Running it with ic5 produced 10236 unique values (instead of 10242), running it
with ic3 641 (instead of 642)
Is it possible that this is not the latest version? The BuildTimeStamp is: Jun
24 2012 06:10:12, you uploaded the
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_make_face_parcellation.linux
version on 16.07.12.
ProgramName: mris_make_face_parcellation ProgramArguments:
--all-info ProgramVersion: $Name: $ TimeStamp: 2012/10/26-11:34:24-GMT
BuildTimeStamp: Jun 24 2012 06:10:12 CVS: $Id: mris_make_face_parcellation.c,v
1.18 2012/06/07 17:52:09 greve Exp $ ... Platform: Darwin PlatformVersion:
10.8.0 CompilerName: GCC CompilerVersion: 40000
Thanks for your help,
Franz
Am 25.10.2012 um 18:29 schrieb Douglas N Greve:
> Hi Franz, this was noted and addressed a few weeks ago. You can download
> a new version here:
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mris_make_face_parcellation.linux
> doug
>
> On 10/25/2012 10:33 AM, Franz Liem wrote:
>> Dear Freesurfers,
>>
>> I have performed make_face_parcellation on fsaverage (with ic5)
>> (Darwin-leopard-i686-stable-pub-v5.1.0). I read_annotation ed the
>> parcellation into matlab an noticed that while colortable.table has
>> 10242 rows (as expected), length(unique(colortable.table(:,5)))
>> produces 9834 => some entries are in the list more than once. If I
>> grasped the procedure correctly, the entries in label are determined
>> by colortable.table(:,5) and colortable.table(:,5) is determined by:
>> % Column 5 is the structure ID, calculated from
>> % R + G*2^8 + B*2^16 + flag*2^24
>>
>> One example for this problem is colortable.table(43,:)
>> and colortable.table(86,:) both read:
>> 0 0 170 0 11141120
>>
>> How are Rm G, B determined?
>> I guess one quick fix would be to introduce flags >0. Would that
>> affect anything else? Or, is there a way to force my own indices
>> onto colortable.table(:,5)? (if I change this entry, save the annot
>> and load the annot, the entry is atR + G*2^8 + B*2^16 + flag*2^24again
>>
>> (I already encountered the effects of this problem a couple of months
>> ago (2. in this post
>> http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg21189.html).)
>>
>> Thank you so much for your help,
>> Franz
>>
>>
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>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
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