Thanks Bruce. is it possible that this is a problem of the scan I was running? The other 5 scans I was running in parallel went through without errors... I'm checking control points and wm.mgz anyway...
2012/10/15 Bruce Fischl <[email protected]> > Hi Pietro > > that's a pretty big defect. Have you checked the ?h.orig.nofix to see why > it is so large? The other problem is that the current FS mac release is 32 > bit, which is why you are running out of memory. It would work properly on > a Linux box with more ram I suspect. We are hoping to have a 64 bit mac > release soon, but in the interim I would suggest you track down the cause > of your huge defect and correct it either with control points, or by > editing the wm.mgz > > cheers > Bruce > > > > On Mon, 15 Oct 2012, pietro de rossi wrote: > > Hi free surfer users and developers, >> for the first time I got this error after running recon-all: >> >> CORRECTING DEFECT 76 (vertices=36299, convex hull=8085) >> mris_fix_topology(74305) malloc: *** mmap(size=1148719104) failed (error >> code=12) >> *** error: can't allocate region >> *** set a breakpoint in malloc_error_break to debug >> Bus error >> Darwin HG-01881507-DM7.local 11.4.0 Darwin Kernel Version 11.4.0: Mon Apr >> 9 >> 19:32:15 PDT 2012; root:xnu-1699.26.8~1/RELEASE_**X86_64 x86_64 >> >> recon-all -s 122 exited with ERRORS at Sat Oct 13 22:31:01 EDT 2012 >> >> What can I do to fix the problem? >> >> Thanks in advance, >> >> Pietro >> >> -- >> Pietro De Rossi, MD >> ------------------------------**------- >> Sapienza Università di Roma, Facoltà di Medicina e Psicologia, >> Dipartimento >> NESMOS (Neuroscienze, Salute Mentale, Organi di Senso), Ospedale >> Sant'Andrea, Via di Grottarossa 1035-1039, 00189 Roma >> >> NESMOS Department (Neurosciences, Mental Health and Sensory Functions), >> School of Medicine and Psychology, Sapienza University, Sant?Andrea >> Hospital, >> >> Via di Grottarossa 1035-1039, 00189 Rome, Italy >> >> Neurobehavioral Clinical Research Section, Social and Behavioral Research >> Branch, National Human Genome Research Institute (NHGRI), National >> Institutes of Health (NIH), Bethesda, Maryland 20892, USA >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. > If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > -- Pietro De Rossi, MD ------------------------------------- Sapienza Università di Roma, Facoltà di Medicina e Psicologia, Dipartimento NESMOS (Neuroscienze, Salute Mentale, Organi di Senso), Ospedale Sant'Andrea, Via di Grottarossa 1035-1039, 00189 Roma NESMOS Department (Neurosciences, Mental Health and Sensory Functions), School of Medicine and Psychology, Sapienza University, Sant’Andrea Hospital, Via di Grottarossa 1035-1039, 00189 Rome, Italy Neurobehavioral Clinical Research Section, Social and Behavioral Research Branch, National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH), Bethesda, Maryland 20892, USA
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