if their definition of what is and is not hippocampus differs from the one we use then you will get different volumes. You need to find out what they defined as part of it and see if it matches our protocol
cheers Bruce On Tue, 2 Oct 2012, Ana Arruda wrote: > The manual protocol was made by doctors.They traced the hippocampus > segmentation based on their knowledge of anatomical structures. > > For automatic segmentation I've used the following command: > recon-all -i input_suject_name -autorecon1 -autorecon2 -s > output_subject_name > > and after this simulation I've been working with the values given in the > terminal X11 for left-hippocampus and right-hippocampus. > > Am I doing anything wrong? Or am I missing something? > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
