The manual protocol was made by doctors.They traced the hippocampus segmentation based on their knowledge of anatomical structures.
For automatic segmentation I've used the following command: recon-all -i input_suject_name -autorecon1 -autorecon2 -s output_subject_name and after this simulation I've been working with the values given in the terminal X11 for left-hippocampus and right-hippocampus. Am I doing anything wrong? Or am I missing something?
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