Hi Kiley, that appears to be a problem with the MNI nu_correct program (FSL unrelated). Do you change or re-install any of the MNI libraries? Can you send the full recon-all.log file? doug
On 06/02/2012 08:43 AM, Kiley Seymour wrote: > Dear Freesurfers, > > I have previously had no trouble using recon-all to process my > structural scans. However, today I encountered the problem below. I > have looked at postings on this mailing list and it seems this issue > is not a freesurfer one. During my last functional analysis of > retinotopy data in freesurfer, I came across a problem that required > me to install a full version of FSL on my ubuntu machine. Do you think > this could be the source of the problem somehow? Otherwise, I am not > sure what could have changed since the last time I processed my data > with recon-all. > > Your input would be very much appreciated. > > Thanks > > Kiley > > Assertion failed at line 827 in file templates/CachedArray.cc > nu_estimate_np_and_em: crashed while running volume_stats (termination > status=256) > nu_correct: crashed while running nu_estimate_np_and_em (termination > status=256) > ERROR: nu_correct > Linux FreeSurfer 2.6.28-11-generic #42-Ubuntu SMP Fri Apr 17 01:57:59 > UTC 2009 i686 GNU/Linux > > > Dr Kiley Seymour > Alexander von Humboldt Postdoctoral Fellow > Klinik für Psychiatrie und Psychotherapie > Charité Campus Mitte > Charitéplatz 1 > D-10117 Berlin > tel: 0049-(0)30-450 517131 > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
