Hi Rashmi, the command line for running the base (subject-template) should be: recon-all -base AA510 -tp AA510.T1 -tp AA510.T2 -tp AA510.T7 -all we usually don't put the '.long' after the base.
I don't think this is causing your problem however. In your case for some reason the talairach transform fails. It could be that something earlier fails. You should - check the .....AA510.long/mri/norm_template.mgz if it looks OK (it is the average of your time points). also the .....AA510.long/mri/orig.mgz should look good. if they are OK, you need to find out why the talairach reg is failing .....AA510.long/mri/transforms/talairach.xfm forgot the command for it, but it is the same as in cross sectional processing. What is weird is your log says this: "INFO: transforms/talairach.xfm already exists! The new transforms/talairach.auto.xfm will not be copied to transforms/talairach.xfm This is done to retain any edits made to transforms/talairach.xfm" So probably you have an old talairach.xfm there. I think deleting the AA510.long and rerunning the base from scratch may fix everything. So maybe you want to try that first. Best, Martin On Tue, 2012-05-22 at 15:00 +0000, Rashmi Singh wrote: > Hello, > I ran longitudinal processing which exited with errors. I am > attaching the output file. > Please advise why this error occurred. The recon –all run ran > perfectly for all the time points for this subject. > My command was as follows: > recon-all -base AA510.long -tp AA510.T1 -tp AA510.T2 -tp AA510.T7 -all > </dev/null&> FSAA510.long & > > > My all other subjects longitudinal run completed without error. > Thanks, > Rashmi > > > ______________________________________________________________________ > > This document may contain information covered under the Privacy Act, 5 > USC 552(a), and/or the Health Insurance Portability and Accountability > Act (PL 104-191) and its various implementing regulations and must be > protected in accordance with those provisions. Healthcare information > is personal and sensitive and must be treated accordingly. If this > correspondence contains healthcare information it is being provided to > you after appropriate authorization from the patient or under > circumstances that don't require patient authorization. You, the > recipient, are obligated to maintain it in a safe, secure and > confidential manner. Redisclosure without additional patient consent > or as permitted by law is prohibited. Unauthorized redisclosure or > failure to maintain confidentiality subjects you to application of > appropriate sanction. If you have received this correspondence in > error, please notify the sender at once and destroy any copies you > have made. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
