Hi Joost, great, but make sure the recon-all processing went OK also. If you had the same directory name twice (for base and for the first time point) stuff will be messed up. Usually recon-all should complain if that happens, but who knows what exactly happened.
Best Martin On Mon, 2012-07-02 at 12:28 +0200, j janssen wrote: > Hi Martin, > > changing the dir-names and qdec table to: > > fsid fsid-base ISI_years Group Gender Age ICV > 11298_1 11298_template 0 patient F 16 1441 > 11298_2 11298_template 1.83 patient F 17.92 1396 > > solved my problem. > > -joost > > > > > On Sun, Jul 1, 2012 at 4:33 PM, j janssen <joost.jansse...@gmail.com> > wrote: > Hi Martin, > > thanks. > > i changed 11298 to 11298_1 and got the same error. are you > suggesting that some recon-all error may have happened because > of the file names? no error messages were reported in any of > the log files, all (cross-sectional and longitudinal) finished > without error. does the error point to two intra-subject > surfaces which should have the same # of vertices but do not > have so? if so, which surfaces? > > thanks, > -joost > > > > > On Fri, Jun 29, 2012 at 8:50 PM, Martin Reuter > <mreu...@nmr.mgh.harvard.edu> wrote: > Hi Joost, > > the tp id cannot be the same as the base id: > > fsid fsid-base ISI_years Group Gender Age ICV > 11298 11298 0 patient F 16 1441 > 11298_2 11298 1.83 patient F 17.92 1396 > > I am amazed that you were able to process it this way? > > So either call the first time point > 11298_1 > or call the base 11298_base in both cases. > > Also make sure your longitudinal processing is correct > (I mean the > recon-all, not the post processing that you are trying > here). > > Best, Martin > > On Fri, 2012-06-29 at 13:35 +0200, j janssen wrote: > > Hi (Martin), > > > > - version 5.1 (Ubuntu 64b) > > - command: long_mris_slopes > --qdec ./qdec/long.qdec.table.n114.dat > > --meas thickness --hemi lh --do-avg --do-rate > --do-pc1 --do-spc > > --do-stack --do-label --time ISI_years --qcache > fsaverage > > - attached: first 3 lines of qdec table containing > the info for > > subject 11298 > > - attached: on screen error output. > > - i have 2 timepoints/subject. > > > > things go awry in the "SUBJECT 11298 Running > Within-Subject GLM" step > > (see attachment): > > > > Reshaping mriglm->mask... > > ERROR: mri_reshape: number of elements cannot change > > > > what am i doing wrong? > > > > -joost > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > The information in this e-mail is intended only for > the person to whom it is > addressed. If you believe this e-mail was sent to you > in error and the e-mail > contains patient information, please contact the > Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail > was sent to you in error > but does not contain patient information, please > contact the sender and properly > dispose of the e-mail. > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
