Hi Anne, What's the error message when you are running waterthreshold 25
Sita On Wed, 23 May 2012, Anne Uhlmann wrote: > Hi Freesurfers, > > I have problems with the troubleshoot of a scan that didn't run at all > within autorecon (while the scan actually looks good). > So I ran the skullstrip manually and came across the following > phenomenon: > -when using waterthreshold 25 it gives me an error message and no > brainmask.mgz file gets created > -when using waterthreshold 24 or lower big chunks of the brain go > missing and most of the skull stays > > I am not sure the manual editing will be a good approach as I would > have to remove the complete skull > Any suggestions how I could get the skullstrip work? > > Thank you, > Anne > > > > > ### > > UNIVERSITY OF CAPE TOWN > > This e-mail is subject to the UCT ICT policies and e-mail disclaimer > published on our website at > http://www.uct.ac.za/about/policies/emaildisclaimer/ or obtainable from > +27 21 650 9111. This e-mail is intended only for the person(s) to whom > it is addressed. If the e-mail has reached you in error, please notify > the author. If you are not the intended recipient of the e-mail you may > not use, disclose, copy, redirect or print the content. If this e-mail > is not related to the business of UCT it is sent by the sender in the > sender's individual capacity. > > ### > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
