Hi Carl, those are all that are in the aseg.mgz. What more did you expect? doug
On 05/15/2012 03:44 PM, Carl Anderson wrote: > Dear Freesurfer Folks, > > I have returned to the problem of trying to extract T2 values from a > T2-map using aseg & mri_segstats. > When I attempt mri_segstats it only returns a small subset of the > regions from aseg (see attached file). > I would like to attach the T2 map but the file exceeds the 25mb limit > for gmail (could I drop the file somewhere?) > Could the T2 values need to be in a special format? > > Thanks very much for your help. > > Carl > >> On Thu, Dec 30, 2010 at 6:06 PM, Nick Schmansky >> <ni...@nmr.mgh.harvard.edu <mailto:ni...@nmr.mgh.harvard.edu> >> <mailto:ni...@nmr.mgh.harvard.edu >> <mailto:ni...@nmr.mgh.harvard.edu>>> wrote: >> >> mri_segstats, for example: >> >> mri_segstats --seg aseg.mgz \ >> --ctab $FREESURFER_HOME/FreeSurferColorLUT.txt \ >> --i T1.mgz \ >> --sum T1.stats >> >> >> produces a text file 'T1.stats' which has stats on each aseg struct as >> taken from the vol T1.mgz. >> >> n. >> >> >> On Thu, 2010-12-30 at 17:52 -0500, Carl Anderson wrote: >> > Dear Freesurfer, >> > >> > >> > I have co-registered a map of whole brain T2-relaxation time >> values to >> > the corresponding aseg.mgz for this subject (see attached jpegs). >> > Does a tool exist in freesurfer to enable regional sampling of T2 >> > values from the T2-relaxation time map based on aseg? >> > >> > >> > Thanks for any thoughts. >> > > > -- > <<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>> > Carl M. Anderson, Ph.D. (mail stop 204) > Assistant Professor of Psychiatry, > Harvard Medical School & > The Neuroimaging Center, > McLean Hospital 115 Mill St. Belmont, MA 02478 > Ph: 617-855-2972; Fax: 617-855-2770 > e-mail: remfr...@gmail.com <mailto:remfr...@gmail.com>; > carl_ander...@hms.harvard.edu <mailto:carl_ander...@hms.harvard.edu> > <<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>> > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
