Thank you very much Dr. Greve. I must still be doing something wrong.
When I try : asegstats2table --skip --common-segs --delimiter comma --tablefile V5vo-BA-lh.csv --hemi lh --parc=BA --meas volume --subjectsfile=a.txt I get : asegstats2table: error: no such option: --hemi When I try : asegstats2table --skip --common-segs --delimiter comma --tablefile V5vo-BA-lh.csv --parc=BA --meas volume --subjectsfile=a.txt I get : asegstats2table: error: no such option: --parc When I try : asegstats2table --skip --common-segs --stats=lh.BA.stats --meas volume --delimiter comma --tablefile V5vo-BA-lh.csv --subjectsfile=a.txt I do not get an error message, however, the table that is creates only has a single column "Measure:volume" with subjects listed in that column. Do you have a newer version of the "asegstats2table" than what comes with "freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0". Once again thank you very much for your suggestions. B.A. On Thu, May 3, 2012 at 10:04 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > you need to run aparcstats2table, something like > > aparcstats2table --skip --tablefile V5vo-BA-lh.dat --parc=BA --meas > volume --hemi lh --delimiter comma ... > > > On 05/02/2012 03:10 PM, Brain Apprentice wrote: >> Hello Surfers, >> >> Command: asegstats2table --skip --delimiter comma --common-segs >> --stats=lh.BA.stats --meas volume --tablefile V5vo-BA-lh.csv >> --subjectsfile=a.txt >> >> I am trying to create a table of "lh.BA.stats" values where all >> subject are listed in a.txt. >> >> asegstats2table tries to work however there is nothing in the table >> but the subject-id's. Does anyone have any ideas what is going wrong? >> >> Thanks, >> >> B.A. >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
